Gene detail

Detail information of GWHGAAZE012249

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009414138.1	PREDICTED: sucrose synthase 4-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q00917\|SUS2_ARATH	Sucrose synthase 2
trEMBL	tr\|D7SYA8\|D7SYA8_VITVI	Sucrose synthase {ECO:0000256\|RuleBase:RU280817}
TAIR10	AT5G49190.1	sucrose synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82479874	82484522	-
GWHAAZE00000003	mRNA	82479874	82484522	-
GWHAAZE00000003	exon	82484520	82484522	-
GWHAAZE00000003	exon	82484308	82484459	-
GWHAAZE00000003	exon	82484030	82484213	-
GWHAAZE00000003	exon	82483253	82483369	-
GWHAAZE00000003	exon	82482909	82483037	-
GWHAAZE00000003	exon	82482189	82482284	-
GWHAAZE00000003	exon	82481950	82482039	-
GWHAAZE00000003	exon	82481580	82481696	-
GWHAAZE00000003	exon	82481288	82481454	-
GWHAAZE00000003	exon	82480843	82481067	-
GWHAAZE00000003	exon	82480187	82480509	-
GWHAAZE00000003	exon	82479874	82479886	-
GWHAAZE00000003	CDS	82484520	82484522	-
GWHAAZE00000003	CDS	82484308	82484459	-
GWHAAZE00000003	CDS	82484030	82484213	-
GWHAAZE00000003	CDS	82483253	82483369	-
GWHAAZE00000003	CDS	82482909	82483037	-
GWHAAZE00000003	CDS	82482189	82482284	-
GWHAAZE00000003	CDS	82481950	82482039	-
GWHAAZE00000003	CDS	82481580	82481696	-
GWHAAZE00000003	CDS	82481288	82481454	-
GWHAAZE00000003	CDS	82480860	82481067	-
GWHAAZE00000003	three_prime_UTR	82480843	82480859	-
GWHAAZE00000003	three_prime_UTR	82480187	82480509	-
GWHAAZE00000003	three_prime_UTR	82479874	82479886	-

Transcript Sequence
>GWHTAAZE012263 ATGGAAGCCATCGTTCTGCCGCCATTCGTAGCCACAGCAATTCGTCCAAGACCTGGTGTTTTGGAATACATTCGTGTAAATGTCTATGAACTTAGCGTTGACCAACTCAGTGTTTCCGAATATCTTTTCTTCAAAGAAGAACTTGTTGATGGCCAGTACAATGAACTGGAGCTTGATTTTGAGCCATTCAATGCAACATTTCCTAGACCGACACGGTCATCATCAATCGGCAATGGAGTTCAGTTCCTCAATCGTCATCTATCATCAATTATGTTCCGTAACAAGGATAGCTTGGCTCCTTTGCTTGATTTTCTCCGAACGCACAAACATGATGGCCATGCACTGATGCTAAATGATCGTATACAAACAATATCCGGACTTCAATTTGCTTTAGCCAGATCGGAGGAATATCTCTCAAAGCTTCCATCCGATACACCATATTCTGATTTTGAATACGCCCCGGATCCTTCTACTTTGGAGAAATTTCTTGGAAGGATTCCTATGGTTTTTAATGTTGTCATTGTGTCTCCTCACGGATACTTTGGCCAAGCAAATGTGTTAGGCTTACCCGACACTGGTGGACAGGTTGTCTATATACTTGACCAAGTGCGTGCTTTAGAGAATGAGATGCTTCTTCAAATACAAAAGCAAGGACTCGATGCTATCCCCAAAATTCTTATTGTGACTCGACTTATACCCAATGCAAAAGGCACAACATGCAATCAGAGGCTCGAAAGAATCAGTGGAACAGAGCATACACACATTCTGAGGGATGTGTCAAACGAGATTGCTGCTGAGTTGCAAGGTGTGCCGGACCTAATAATTGGAAACTACAGTGATGGAAATCTTGTTGCTTCATTGTTATCTAATAAACTTGGAGTCACACAGTGTAACATTGCACATGCGCTGGAGAAAACAAAATATCCGAACTCCGATTTATACTGGAGAAAACATGAAGAAAAGTACCATTTCTCAAGCCAATTTACTGCTGATCTCATTGCAATGAATAATGCAGATTTCATTATCACCAGCACCTACCAAGAGATTGCAGGAAGCAAGAATCATGTTGGGCAGTACGAGAGCCACATAGCTTTCACTCTTCCAGGACACTACAGAGTTGTTCACGGCATAGATGTCTTCGATCCCAAATTCAATATCGTCTCTCCAGGGGCAGATATGAGCATGTATTTTTCATACTCAGAGAAGCAAATGAGACTTACGGCCCTACATGGTTCGATTGAAGAACTTTTGTATGATCCCTAGCAGAATGATGAACACATCGGAATGTTGAGCGACCAATCAAAAGCCTATCATCTTTTCCATGGCAAGGCTCGACAGGGTGAAAAACCTAACCGGGTTGGTCGAGTGTTATGGTAGAAATGCAAAGCTGAGAGAGTTGGCTAATCTTGTTGTGGTTGGTGGTTACATTGATGCAAGTAAATCTAGGGACAGGGAAGAAATTTCGGAGATTGAGAAGATGCACAGCCTCATAAAAGAATACAACTTGCATGGTAAATTCCGATGGATAACGGCTCAAATGAACCGTGCTCACAATGGCGAGCTTTATCGCTATATAGCAGATACAAGAGGCATTTTTGTTCAGCCCGCTTTCTATG

Network for GWHGAAZE012249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00862.20	Sucrose_synth	2	152	4.80E-53
PF00862.20	Sucrose_synth	153	257	1.30E-57
PF00862.20	Sucrose_synth	258	418	7.00E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00695	E2.4.1.13	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005985	biological_process	sucrose metabolic process
GO:0016157	molecular_function	sucrose synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.118
	SRR3591706	second leaf	0.072
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	0.153
	SRR3591709	Stem	0.112
	SRR3591710	White floral bud	0.087
	SRR3591711	White flower	0.116
	SRR3591712	Green floral bud	0.195
	SRR3591713	Yellow flower	0.142
SRP173429	SRR8316895	Juvenile bud stage	2.141
	SRR8316896	Juvenile bud stage	1.838
	SRR8316897	Juvenile bud stage	0.562
	SRR8316894	Third green stage	1.206
	SRR8316900	Third green stage	2.522
	SRR8316901	Third green stage	2.362
	SRR8316898	Complete white stage	0.179
	SRR8316899	Complete white stage	2.171
	SRR8316903	Complete white stage	0.257
	SRR8316902	Silver flowering stage	0.091
	SRR8316904	Silver flowering stage	0.165
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.088
	SRR8316907	Gold flowering stage	0.087
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	1.438
	SRR6706287	Light intensity 50%	2.263
	SRR6706288	Light intensity 20%	2.404
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.910
	CNS0095593	Slightly white alabastrum(diploid) 2	1.420
	CNS0095594	Slightly white alabastrum(diploid) 3	1.235
	CNS0095595	Whole white alabastrum(diploid) 2	2.031
	CNS0095596	Whole white alabastrum(diploid) 3	1.423
	CNS0095597	Whole white alabastrum(diploid) 4	1.231
	CNS0095598	Silvery flower (diploied) 1	1.029
	CNS0095599	Silvery flower (diploied) 2	1.005
	CNS0095600	Silvery flower (diploied) 3	0.013
	CNS0095601	Golden flower (diploid) 1	1.043
	CNS0095602	Golden flower (diploid) 2	0.534
	CNS0095603	Golden flower (diploid) 3	0.212
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.523
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.622
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.067
	CNS0095610	Silvery flower (tetraploid) 1	0.125
	CNS0095611	Silvery flower (tetraploid) 2	0.276
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.048
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.167
	CRR073298	Stem 2	3.047
	CRR073299	Stem 3	0.207
	CRR073300	Leaf 1	2.104
	CRR073301	Leaf 2	2.008
	CRR073302	Leaf 3	0.246
	CRR073303	Juvenile bud 1	0.252
	CRR073304	Juvenile bud 2	0.291
	CRR073305	Juvenile bud 3	0.049
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.012
	CRR073308	Third green 3	0.023
	CRR073309	Second white 1	0.019
	CRR073310	Second white 2	0.014
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.291
	CRR073316	Gold flowering 2	0.955
	CRR073317	Gold flowering 3	0.146
	CRR073318	Tawny withering 1	0.241
	CRR073319	Tawny withering 2	0.047
	CRR073320	Tawny withering 3	0.338