Home
Network
Network Search
Module Search
Search
Tools
Blast
Motif
GSEA
Heatmap
Jbrowse
Gene family
CYP450
TF Family
Protein Kinases
Ubiquitin
EAR family
Pathway
Download
Detail information of GWHGAAZE012250
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
CBI22963.3
4.8654E-123
unnamed protein product [Vitis vinifera]
Swissprot
tr|Q6H9K0|PGLR2_PLAAC
2E-90
Exopolygalacturonase (Precursor; Fragment)
trEMBL
tr|D7SYA6|D7SYA6_VITVI
2E-123
Putative uncharacterized protein {ECO:0000313|EMBL:CBI22963.3}
TAIR10
AT4G18180.1
6E-70
Pectin lyase-like superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000003
gene
82502097
82504010
+
GWHAAZE00000003
mRNA
82502097
82504010
+
GWHAAZE00000003
exon
82502097
82502105
+
GWHAAZE00000003
exon
82502179
82502481
+
GWHAAZE00000003
exon
82502923
82503212
+
GWHAAZE00000003
exon
82503324
82503552
+
GWHAAZE00000003
exon
82503771
82504010
+
GWHAAZE00000003
CDS
82502097
82502105
+
GWHAAZE00000003
CDS
82502179
82502481
+
GWHAAZE00000003
CDS
82502923
82503212
+
GWHAAZE00000003
CDS
82503324
82503552
+
GWHAAZE00000003
CDS
82503771
82504010
+
Transcript Sequence
>GWHTAAZE012264 ATGTGCATGGCATTTTTAGCGGCATGGAAAGAAGCTTGTGGTTACGAAGGGAAATCAATTTTAGTTGTACCCAGGGGTACATTTTTTGTGAGGCAAGTAAAATTTAGGGGACCGTGCTGCAACAATAGGTCACCCGTGATTGCCATTAAAGGGACTCTGAAGGCTCCATCAAGCAGTGACACTTTCTCTTCATATACATGGATTACGTTTCAAAGATTGAACGCCCTTTATCTCATTGGACATTCTGGTACCAGTAGCTTTGATGCCCGAGGAGAATCATGGTCCAAAAATAAACACAATAACTATCCTACGTCGCTGAAATTCGAGGAGGTTTCAAAGGGGAAAATATGCAATTTTTCCATATTCAACGACAAGGGCTTCCACATTAACTTCTCAGGAAGCCGTGACATTAATGTTAGCGGCCTCATCATTACATCTCCCCCAAACGGCCCAAACACAGACGGCATTCACATTGGTAATTCTGCCAATATCAACATCACTTCCTCAATAATCGCAGTGGGTGACGATTGCATTTCAGTTGGACCCAACAACACCAACATATATGTTCATAATGTAACGTGCGGTCCAGGCCATGGCATCAGTATCGGAAGTCTTGGAAAATATCCAAATGAGGGGAATGTGGATGGGGTGGCGGTGAGGAACTGCACCATACATGGGACTAACAATGGATTGAGAATAAAGACATGGCCCACATCTTACAACAGCACAGCTTCTAATATGATGTTCGAGGATATTGTAATGATCAACGTTTCTAACCCTATAATCGTTGACCAACAGTACTGCCCTCACCATGCCTGTCTCAATCCTCAGCCCTCACTAGTGAAGCTTAGAAATGTTCATTTCAAGAACATAACAGGGACATGCAAAAGCAAGTGCTCAATAACATTAAACTGCAGTTCTGGGGTGCCTTGTGAGAATGTGGACCTTTTTAATGTCAATCTCAACTACAAGACTTCAAATGGCATTCAGCTCCCAGCCAAGTTGAATGTGAATGGCAGTGTTATTGGTTTAGAAGAGGATAGTGTTCATGGTTTACAAATTATTGGCTAG
Network for GWHGAAZE012250
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00295.18
Glyco_hydro_28
13
328
2.30E-82
Protein Sequence
>GWHPAAZE012257 MCMAFLAAWKEACGYEGKSILVVPRGTFFVRQVKFRGPCCNNRSPVIAIKGTLKAPSSSDTFSSYTWITFQRLNALYLIGHSGTSSFDARGESWSKNKHNNYPTSLKFEEVSKGKICNFSIFNDKGFHINFSGSRDINVSGLIITSPPNGPNTDGIHIGNSANINITSSIIAVGDDCISVGPNNTNIYVHNVTCGPGHGISIGSLGKYPNEGNVDGVAVRNCTIHGTNNGLRIKTWPTSYNSTASNMMFEDIVMINVSNPIIVDQQYCPHHACLNPQPSLVKLRNVHFKNITGTCKSKCSITLNCSSGVPCENVDLFNVNLNYKTSNGIQLPAKLNVNGSVIGLEEDSVHGLQIIG
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K01213
E3.2.1.67
Metabolic pathways
map01100
Pentose and glucuronate interconversions
map00040
Gene Ontology
GO term
Ontology
Name
GO:0005975
biological_process
carbohydrate metabolic process
GO:0004650
molecular_function
polygalacturonase activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
0.000
SRR3591706
second leaf
0.000
SRR3591707
mature leaf
0.000
SRR3591708
Shoot apex
0.000
SRR3591709
Stem
0.000
SRR3591710
White floral bud
0.366
SRR3591711
White flower
0.085
SRR3591712
Green floral bud
0.195
SRR3591713
Yellow flower
0.000
SRP173429
SRR8316895
Juvenile bud stage
0.081
SRR8316896
Juvenile bud stage
0.667
SRR8316897
Juvenile bud stage
0.004
SRR8316894
Third green stage
0.053
SRR8316900
Third green stage
0.176
SRR8316901
Third green stage
0.191
SRR8316898
Complete white stage
0.000
SRR8316899
Complete white stage
0.085
SRR8316903
Complete white stage
0.000
SRR8316902
Silver flowering stage
0.000
SRR8316904
Silver flowering stage
0.000
SRR8316905
Silver flowering stage
0.000
SRR8316906
Gold flowering stage
0.000
SRR8316907
Gold flowering stage
0.000
SRR8316908
Gold flowering stage
0.000
SRP132670
SRR6706286
Control
0.013
SRR6706287
Light intensity 50%
0.034
SRR6706288
Light intensity 20%
0.002
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
0.237
CNS0095593
Slightly white alabastrum(diploid) 2
0.157
CNS0095594
Slightly white alabastrum(diploid) 3
0.320
CNS0095595
Whole white alabastrum(diploid) 2
0.296
CNS0095596
Whole white alabastrum(diploid) 3
0.610
CNS0095597
Whole white alabastrum(diploid) 4
0.451
CNS0095598
Silvery flower (diploied) 1
0.051
CNS0095599
Silvery flower (diploied) 2
0.120
CNS0095600
Silvery flower (diploied) 3
0.179
CNS0095601
Golden flower (diploid) 1
0.000
CNS0095602
Golden flower (diploid) 2
0.033
CNS0095603
Golden flower (diploid) 3
0.000
CNS0095604
Slightly white alabastrum(tetraploid) 1
0.793
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.256
CNS0095606
Slightly white alabastrum(tetraploid) 3
0.224
CNS0095607
Whole white alabastrum(tetraploid) 1
0.822
CNS0095608
Whole white alabastrum(tetraploid) 2
0.210
CNS0095609
Whole white alabastrum(tetraploid) 3
0.000
CNS0095610
Silvery flower (tetraploid) 1
0.000
CNS0095611
Silvery flower (tetraploid) 2
0.000
CNS0095612
Silvery flower (tetraploid) 3
0.000
CNS0095613
Golden flower (tetraploid) 1
0.000
CNS0095614
Golden flower (tetraploid) 2
0.000
CNS0095615
Golden flower (tetraploid) 3
0.000
CRA001975
CRR073297
Stem 1
0.227
CRR073298
Stem 2
0.083
CRR073299
Stem 3
0.795
CRR073300
Leaf 1
0.214
CRR073301
Leaf 2
0.001
CRR073302
Leaf 3
0.000
CRR073303
Juvenile bud 1
0.112
CRR073304
Juvenile bud 2
0.000
CRR073305
Juvenile bud 3
0.000
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.000
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.000
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.000
CRR073316
Gold flowering 2
0.000
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.000
CRR073319
Tawny withering 2
0.000
CRR073320
Tawny withering 3
0.000