Gene detail

Detail information of GWHGAAZE012254

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035668.1	4.0315E-160	Phospholipase D P1, ZETA 1 isoform 3 [Theobroma cacao]
Swissprot	tr\|Q9LRZ5\|PLDP1_ARATH	7E-131	Phospholipase D p1
trEMBL	tr\|A0A061EWF3\|A0A061EWF3_THECC	2E-160	Phospholipase D P1, ZETA 1 isoform 3 {ECO:0000313\|EMBL:EOY06594.1}
TAIR10	AT3G16785.1	4E-107	phospholipase D P1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82566025	82575722	+
GWHAAZE00000003	mRNA	82566025	82575722	+
GWHAAZE00000003	exon	82566025	82566255	+
GWHAAZE00000003	exon	82567553	82567654	+
GWHAAZE00000003	exon	82567775	82567887	+
GWHAAZE00000003	exon	82567989	82568130	+
GWHAAZE00000003	exon	82574888	82575058	+
GWHAAZE00000003	exon	82575603	82575722	+
GWHAAZE00000003	CDS	82566025	82566255	+
GWHAAZE00000003	CDS	82567553	82567654	+
GWHAAZE00000003	CDS	82567775	82567887	+
GWHAAZE00000003	CDS	82567989	82568130	+
GWHAAZE00000003	CDS	82574888	82575058	+
GWHAAZE00000003	CDS	82575603	82575722	+

Transcript Sequence
>GWHTAAZE012268 ATGGCGACAGAACAGTTAATGACTGATCGCACCGGTCCACGCTACGTTCAAATACAACGGGATCCGTTGCCGTCGATGATGTCATCTTTCTTCTCGTTCCATCACAGCCCGGAGACTACTCGAATTTTCGACGAGTTGCCTAGGGCCACAATCGTAGACGTTTCTCGGCCCGACGCCGGTGATATCAGCCCCGCGCTTCTTTCTTATACCATTGAGTTTGAATACAAACAGTTCAAGTGGCAACTAGTGAAGAAAGCTGCACAAGTATTTTATTTACACTTCGCATTGAAGAAACGTGCATTTATTGAGGAAATTCATGAGAAGCAGGAACAGGTTAAAGAATGGCTCCAAAGCCTAGGAATAGGAGATCATACAAATGTTGTGCAAGTTGATGACGAGCCTGACGATGAGACTCCTACACACCATGATGAAAGCGCTAGAAATAGAGATGTTCCATCTAGTGCTGCTCTGCCAATTATTCGGCCCGCTCTTGGAAGGCAGAACTCCATGTCAGACCGAGCAAAGGTAGCAATGCAAGATTACCTAAATCATTTTCTTGGAAACATGGATATTGTCAACTCCCGAGAGGTTTGCAAGTTTTTGAAGGTTTCTACATTGTCGTTCACACCAGAGTATGGCCCTAAGCTGAAAGAAGATTATGTAATGGTGAAACACTTGCGGAAAATTCTAAAGGATGATAGTCATAGAACATGTTTTGTGTGTCATTGGTTTAGTTGTTGCTATGAAGACTGGCAGAAGGTATGGGCTGTGCTGAAGCCTGGATTCTTGGCTGTTCTTAAAGATCCTTTTGACACCAAGCCTTTGGATATAGTTGTTTTCAATGTATTACCAGCCTCAGATTTGGATGGAGAAGGCTGA

Network for GWHGAAZE012254

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.281
	SRR3591706	second leaf	3.309
	SRR3591707	mature leaf	3.004
	SRR3591708	Shoot apex	5.140
	SRR3591709	Stem	4.383
	SRR3591710	White floral bud	3.771
	SRR3591711	White flower	3.258
	SRR3591712	Green floral bud	4.508
	SRR3591713	Yellow flower	1.316
SRP173429	SRR8316895	Juvenile bud stage	0.652
	SRR8316896	Juvenile bud stage	1.727
	SRR8316897	Juvenile bud stage	0.706
	SRR8316894	Third green stage	0.678
	SRR8316900	Third green stage	0.826
	SRR8316901	Third green stage	1.073
	SRR8316898	Complete white stage	0.219
	SRR8316899	Complete white stage	0.867
	SRR8316903	Complete white stage	0.167
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.150
	SRR8316905	Silver flowering stage	0.164
	SRR8316906	Gold flowering stage	0.516
	SRR8316907	Gold flowering stage	0.776
	SRR8316908	Gold flowering stage	0.524
SRP132670	SRR6706286	Control	1.631
	SRR6706287	Light intensity 50%	1.496
	SRR6706288	Light intensity 20%	1.390
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.591
	CNS0095593	Slightly white alabastrum(diploid) 2	0.682
	CNS0095594	Slightly white alabastrum(diploid) 3	0.096
	CNS0095595	Whole white alabastrum(diploid) 2	0.460
	CNS0095596	Whole white alabastrum(diploid) 3	0.522
	CNS0095597	Whole white alabastrum(diploid) 4	0.988
	CNS0095598	Silvery flower (diploied) 1	0.568
	CNS0095599	Silvery flower (diploied) 2	0.218
	CNS0095600	Silvery flower (diploied) 3	0.215
	CNS0095601	Golden flower (diploid) 1	0.230
	CNS0095602	Golden flower (diploid) 2	0.298
	CNS0095603	Golden flower (diploid) 3	0.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.882
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.554
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.844
	CNS0095610	Silvery flower (tetraploid) 1	0.315
	CNS0095611	Silvery flower (tetraploid) 2	0.258
	CNS0095612	Silvery flower (tetraploid) 3	0.074
	CNS0095613	Golden flower (tetraploid) 1	0.365
	CNS0095614	Golden flower (tetraploid) 2	0.196
	CNS0095615	Golden flower (tetraploid) 3	0.434
CRA001975	CRR073297	Stem 1	0.868
	CRR073298	Stem 2	1.167
	CRR073299	Stem 3	0.228
	CRR073300	Leaf 1	1.239
	CRR073301	Leaf 2	1.178
	CRR073302	Leaf 3	0.114
	CRR073303	Juvenile bud 1	0.314
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.583
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.539
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.213
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.790
	CRR073317	Gold flowering 3	0.005
	CRR073318	Tawny withering 1	0.024
	CRR073319	Tawny withering 2	0.003
	CRR073320	Tawny withering 3	0.395