Gene detail

Detail information of GWHGAAZE012257

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006363647.1	PREDICTED: WD repeat-containing protein 43-like [Solanum tuberosum]
trEMBL	tr\|M1AUU1\|M1AUU1_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400030810}
TAIR10	AT5G11240.1	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82609225	82621918	+
GWHAAZE00000003	mRNA	82609225	82621918	+
GWHAAZE00000003	exon	82609225	82609314	+
GWHAAZE00000003	exon	82610072	82610215	+
GWHAAZE00000003	exon	82610326	82610441	+
GWHAAZE00000003	exon	82611135	82611289	+
GWHAAZE00000003	exon	82612331	82612419	+
GWHAAZE00000003	exon	82612578	82613112	+
GWHAAZE00000003	exon	82619257	82619358	+
GWHAAZE00000003	exon	82619553	82619707	+
GWHAAZE00000003	exon	82619815	82619894	+
GWHAAZE00000003	exon	82620016	82620127	+
GWHAAZE00000003	exon	82621071	82621145	+
GWHAAZE00000003	exon	82621871	82621918	+
GWHAAZE00000003	CDS	82609225	82609314	+
GWHAAZE00000003	CDS	82610072	82610215	+
GWHAAZE00000003	CDS	82610326	82610441	+
GWHAAZE00000003	CDS	82611135	82611289	+
GWHAAZE00000003	CDS	82612331	82612419	+
GWHAAZE00000003	CDS	82612578	82613112	+
GWHAAZE00000003	CDS	82619257	82619358	+
GWHAAZE00000003	CDS	82619553	82619707	+
GWHAAZE00000003	CDS	82619815	82619894	+
GWHAAZE00000003	CDS	82620016	82620127	+
GWHAAZE00000003	CDS	82621071	82621145	+
GWHAAZE00000003	CDS	82621871	82621918	+

Transcript Sequence
>GWHTAAZE012271 ATGGGCTCATCAAACATCAAAGACCTCTTGACCTCTTTTAGTCCTTCTCTCGACTTCTTCGCCATCAGTTCCGGTGATGGTCGGATTAAGATTTGGGATACTCTGAAAGGTCAGGTCCAGACCGAGTTTGCAGATATTGTGTCGAGCGATGCAACAGAATTATTAGGTAAGCCGAAAGGGGGCCACCTTTCAGTTGATTATACTTGCATGAAGTGGCTGTCCATGGATAAAAAGAAAAAAAGGAAGCTTGGAAGTTCCTTCTTGGTGTTAGGAACAGGTAGTGGTGATGTTTTAGCATTGGATGTGGCCGCTGGTCAGTTGAAGTGGAGAGTTAGTGATTGCCATCCTGGGGGTGTCACTTCCATTTCATTTCCTACACATGGTTCATTCATTTACACTGCCGGCACTGATGGGATGATCTGCCAACTTGATTCTATGACAGGGAATTGTTTGGGAAAGTTTAGGGCTTCTACAAAAGCAATACATTCAATGTCTGTTTCATCAGATGGGAGGATATTGGCAACTGCATCAGCTCAATTAAAGATTTTCAATTGCTCAGACCGCAAAAAGCTACAGAAATTTTCAGGCCACCCTGGGGCTGTTTGGTGTATAATCTTTTCTGAAGATGGAAAGTACGCCTTTTCTTCATCTGTTGGTGAACGATATGTTGCAGTTTGGAAGATAGATGGTAGCAAAAAGCAATCAGCTTGCTGTGTTCTTGCAACGGACCACCCTGCTGTCATTCTAGACAGCAGGTGCATTGACACTGAGGGTGCAGATAATGCAGGTCTATATGTTTTGGCCATTTCTGAAATGGGCGTCTGCTACTTTTGGCATGGAAAGGATATTGATGAACTACGCACTTCTAAGCCCACAAAAGTCTTTGCCAATAAACTTTCTAAGAATCACAAGAGCACAGTACCTGCAATATTTTCTGCCAAATTTCAAGGCATCCCGAAACCTGCTTCTGGATCTCTGTTTTTAGCCCATGGTGTGGTAATAAAGCCATCATTTGAGAAAATCTTGGTGCAGCCCGGCACTGACGTGAAGTTAAACAGTTCCCTTGACGGGATCCTTTTACCGATCAGTCAATCTCACAAATCTAAGAAGGGGTCAGATCAGAATCGAATTACTGCACTGGACCGTGCAAATGCAGAAGATGCTTTACTTCCAATACCTAAGATTTATAATCTGGTCTACCAAAGTGGAGTTCACCCTGCGATGAGCAATGATAACATGCAAGTTGATGATGCCACTTTCTGCGTGGAGGATCAGCTGAGATCCCTTGGGATACTTAGAAATAACGATGAACTTACATCTAATTCAATCCTTGATTCTAAAATTTTGAAGGGTATTAATCTTGAAGCTAATTGGCCGCAAAGGAAGATGAGGGAATATGTTCTCTCTATGACACCTAGTGATGCGTACAAATTGTTGAAAGTGCTGTTGTCCATGTGGCAATCGAGATCATGCAGAGGAAAATACGTTCTTCCATGGATATCTTGTGTATTAGTGAATCACAGTGAGTTCATCATATCTCAGGAACCAGCGACCCAACTGCTAGACTCCTTGTACAAGCTTACCAAATCAAAAGCGGAGGCTACTCACTCTTTATTGCAGTTGTCGGGTCGCTTGCAACTCATAACGGCACAGGTCTTTGAAGTTTTGCCTTTGGTTGGACCTGGTAACCAGAACTTCTAA

Network for GWHGAAZE012257

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	10	33	0.021
PF00400.33	WD40	189	226	0.0016
PF04003.13	Utp12	459	549	9.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14546	UTP5, WDR43	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.804
	SRR3591706	second leaf	5.042
	SRR3591707	mature leaf	6.578
	SRR3591708	Shoot apex	17.591
	SRR3591709	Stem	12.710
	SRR3591710	White floral bud	12.454
	SRR3591711	White flower	19.522
	SRR3591712	Green floral bud	9.621
	SRR3591713	Yellow flower	14.350
SRP173429	SRR8316895	Juvenile bud stage	7.313
	SRR8316896	Juvenile bud stage	10.282
	SRR8316897	Juvenile bud stage	4.729
	SRR8316894	Third green stage	4.005
	SRR8316900	Third green stage	9.494
	SRR8316901	Third green stage	9.202
	SRR8316898	Complete white stage	2.117
	SRR8316899	Complete white stage	10.620
	SRR8316903	Complete white stage	3.775
	SRR8316902	Silver flowering stage	3.929
	SRR8316904	Silver flowering stage	5.638
	SRR8316905	Silver flowering stage	3.596
	SRR8316906	Gold flowering stage	8.556
	SRR8316907	Gold flowering stage	10.867
	SRR8316908	Gold flowering stage	8.549
SRP132670	SRR6706286	Control	9.247
	SRR6706287	Light intensity 50%	9.978
	SRR6706288	Light intensity 20%	10.628
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.384
	CNS0095593	Slightly white alabastrum(diploid) 2	5.382
	CNS0095594	Slightly white alabastrum(diploid) 3	6.503
	CNS0095595	Whole white alabastrum(diploid) 2	6.169
	CNS0095596	Whole white alabastrum(diploid) 3	5.689
	CNS0095597	Whole white alabastrum(diploid) 4	4.707
	CNS0095598	Silvery flower (diploied) 1	6.819
	CNS0095599	Silvery flower (diploied) 2	5.005
	CNS0095600	Silvery flower (diploied) 3	8.361
	CNS0095601	Golden flower (diploid) 1	5.429
	CNS0095602	Golden flower (diploid) 2	6.070
	CNS0095603	Golden flower (diploid) 3	6.915
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.804
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.261
	CNS0095610	Silvery flower (tetraploid) 1	7.904
	CNS0095611	Silvery flower (tetraploid) 2	8.112
	CNS0095612	Silvery flower (tetraploid) 3	5.676
	CNS0095613	Golden flower (tetraploid) 1	3.291
	CNS0095614	Golden flower (tetraploid) 2	5.189
	CNS0095615	Golden flower (tetraploid) 3	4.109
CRA001975	CRR073297	Stem 1	8.940
	CRR073298	Stem 2	7.471
	CRR073299	Stem 3	5.322
	CRR073300	Leaf 1	9.527
	CRR073301	Leaf 2	6.366
	CRR073302	Leaf 3	4.679
	CRR073303	Juvenile bud 1	3.564
	CRR073304	Juvenile bud 2	3.237
	CRR073305	Juvenile bud 3	5.434
	CRR073306	Third green 1	1.687
	CRR073307	Third green 2	2.075
	CRR073308	Third green 3	2.503
	CRR073309	Second white 1	2.414
	CRR073310	Second white 2	1.469
	CRR073311	Second white 3	2.593
	CRR073312	Silver flowering 1	1.215
	CRR073313	Silver flowering 2	1.909
	CRR073314	Silver flowering 3	1.555
	CRR073315	Gold flowering 1	3.838
	CRR073316	Gold flowering 2	3.813
	CRR073317	Gold flowering 3	2.493
	CRR073318	Tawny withering 1	6.759
	CRR073319	Tawny withering 2	6.289
	CRR073320	Tawny withering 3	6.899