Gene detail

Detail information of GWHGAAZE012268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007223794.1	1.31019E-62	hypothetical protein PRUPE_ppa013171mg [Prunus persica]
Swissprot	tr\|Q8LG10\|GAT15_ARATH	9E-46	GATA transcription factor 15
trEMBL	tr\|M5XTT2\|M5XTT2_PRUPE	5E-63	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24993.1}
TAIR10	AT3G06740.1	7E-34	GATA transcription factor 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82701035	82701899	-
GWHAAZE00000003	mRNA	82701035	82701899	-
GWHAAZE00000003	exon	82701035	82701343	-
GWHAAZE00000003	exon	82701614	82701745	-
GWHAAZE00000003	exon	82701879	82701899	-
GWHAAZE00000003	CDS	82701879	82701899	-
GWHAAZE00000003	CDS	82701614	82701745	-
GWHAAZE00000003	CDS	82701035	82701343	-

Transcript Sequence
>GWHTAAZE012282 ATGGTGGATCTAAGTGATAAAGGTTCGGAGTCTGAAGATATGAGTAGCAAAACTCCAGATAGGGCTTCATCGGAAGAAGGACATGTTAAAACTTGCGCCGACTGTGGAACCACAAAAACTCCTCTATGGAGAGGCGGTCCGGCTGGCCCTAAGTCACTGTGCAATGCTTGTGGGATCAGAAGCAGGAAAAAGAGAAGGGCGCTTTTAGGTCTAAACAAAGAGGAGAAGAAGACCAAGAAAACGAGTACAAGCAGTAGTAGCAATAGCAACGGAAATGGTACAAGTAATAGCAGCGACAAATTGGGTGATTCACTGAAGAGAAGATTGATGGCTCTGGGAAGAGAAGTGGTGTTGCAGAGACCAAGATCAACGGTGGGGAAACAAAGGAGAAAAAAGCTTGGGGAGGAAGAACAAGCTGCTTTTCTCTTGATGGCTCTATCTTGTGGCTCTGTTTATGCTTAA

Network for GWHGAAZE012268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.28	GATA	32	66	4.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.202
	SRR3591706	second leaf	21.152
	SRR3591707	mature leaf	36.230
	SRR3591708	Shoot apex	25.812
	SRR3591709	Stem	18.616
	SRR3591710	White floral bud	23.474
	SRR3591711	White flower	30.143
	SRR3591712	Green floral bud	48.444
	SRR3591713	Yellow flower	10.202
SRP173429	SRR8316895	Juvenile bud stage	13.821
	SRR8316896	Juvenile bud stage	29.169
	SRR8316897	Juvenile bud stage	4.655
	SRR8316894	Third green stage	11.205
	SRR8316900	Third green stage	53.771
	SRR8316901	Third green stage	41.528
	SRR8316898	Complete white stage	5.391
	SRR8316899	Complete white stage	35.670
	SRR8316903	Complete white stage	10.727
	SRR8316902	Silver flowering stage	2.860
	SRR8316904	Silver flowering stage	2.397
	SRR8316905	Silver flowering stage	0.914
	SRR8316906	Gold flowering stage	2.190
	SRR8316907	Gold flowering stage	2.429
	SRR8316908	Gold flowering stage	5.570
SRP132670	SRR6706286	Control	57.060
	SRR6706287	Light intensity 50%	42.435
	SRR6706288	Light intensity 20%	50.845
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.229
	CNS0095593	Slightly white alabastrum(diploid) 2	27.139
	CNS0095594	Slightly white alabastrum(diploid) 3	21.834
	CNS0095595	Whole white alabastrum(diploid) 2	27.484
	CNS0095596	Whole white alabastrum(diploid) 3	30.295
	CNS0095597	Whole white alabastrum(diploid) 4	21.667
	CNS0095598	Silvery flower (diploied) 1	23.704
	CNS0095599	Silvery flower (diploied) 2	27.239
	CNS0095600	Silvery flower (diploied) 3	9.488
	CNS0095601	Golden flower (diploid) 1	25.244
	CNS0095602	Golden flower (diploid) 2	9.723
	CNS0095603	Golden flower (diploid) 3	7.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.850
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.863
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.886
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.342
	CNS0095610	Silvery flower (tetraploid) 1	13.657
	CNS0095611	Silvery flower (tetraploid) 2	16.460
	CNS0095612	Silvery flower (tetraploid) 3	2.125
	CNS0095613	Golden flower (tetraploid) 1	2.986
	CNS0095614	Golden flower (tetraploid) 2	12.560
	CNS0095615	Golden flower (tetraploid) 3	1.053
CRA001975	CRR073297	Stem 1	20.486
	CRR073298	Stem 2	18.592
	CRR073299	Stem 3	17.237
	CRR073300	Leaf 1	29.091
	CRR073301	Leaf 2	31.899
	CRR073302	Leaf 3	21.123
	CRR073303	Juvenile bud 1	28.559
	CRR073304	Juvenile bud 2	17.024
	CRR073305	Juvenile bud 3	18.964
	CRR073306	Third green 1	2.568
	CRR073307	Third green 2	1.089
	CRR073308	Third green 3	3.283
	CRR073309	Second white 1	1.353
	CRR073310	Second white 2	0.328
	CRR073311	Second white 3	0.693
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.147
	CRR073314	Silver flowering 3	1.516
	CRR073315	Gold flowering 1	16.920
	CRR073316	Gold flowering 2	26.880
	CRR073317	Gold flowering 3	28.957
	CRR073318	Tawny withering 1	30.911
	CRR073319	Tawny withering 2	25.852
	CRR073320	Tawny withering 3	25.303