Detail information of GWHGAAZE012274


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011100801.10PREDICTED: AMSH-like ubiquitin thioesterase 3 [Sesamum indicum]
Swissprottr|Q5PNU3|AMSH3_ARATH0AMSH-like ubiquitin thioesterase 3
trEMBLtr|D7SY60|D7SY60_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22917.3}
TAIR10AT4G16144.11E-168associated molecule with the SH3 domain of STAM 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8276878382778265-
GWHAAZE00000003mRNA8276878382778265-
GWHAAZE00000003exon8277823982778265-
GWHAAZE00000003exon8277756482777628-
GWHAAZE00000003exon8277738382777458-
GWHAAZE00000003exon8277707782777277-
GWHAAZE00000003exon8277675682776844-
GWHAAZE00000003exon8277536382775468-
GWHAAZE00000003exon8277523682775282-
GWHAAZE00000003exon8277474982775061-
GWHAAZE00000003exon8277455782774646-
GWHAAZE00000003exon8277440382774465-
GWHAAZE00000003exon8277226482772338-
GWHAAZE00000003exon8277181182771873-
GWHAAZE00000003exon8276947082769522-
GWHAAZE00000003exon8276878382768957-
GWHAAZE00000003CDS8277823982778265-
GWHAAZE00000003CDS8277756482777628-
GWHAAZE00000003CDS8277738382777458-
GWHAAZE00000003CDS8277707782777277-
GWHAAZE00000003CDS8277675682776844-
GWHAAZE00000003CDS8277536382775468-
GWHAAZE00000003CDS8277523682775282-
GWHAAZE00000003CDS8277474982775061-
GWHAAZE00000003CDS8277455782774646-
GWHAAZE00000003CDS8277440382774465-
GWHAAZE00000003CDS8277226482772338-
GWHAAZE00000003CDS8277181182771873-
GWHAAZE00000003CDS8276947082769522-
GWHAAZE00000003CDS8276878382768957-
Transcript Sequence

Network for GWHGAAZE012274

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08969.12USP8_dimer9745.60E-06
PF01398.22JAB3024091.10E-18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM

KEGG pathway

KO Enzyme pathway mapID
K11866STAMBP, AMSH Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.502
SRR3591706second leaf10.899
SRR3591707mature leaf18.017
SRR3591708Shoot apex15.273
SRR3591709Stem29.022
SRR3591710White floral bud24.728
SRR3591711White flower33.142
SRR3591712Green floral bud19.382
SRR3591713Yellow flower29.994
SRP173429 SRR8316895Juvenile bud stage 16.628
SRR8316896Juvenile bud stage 23.433
SRR8316897Juvenile bud stage 10.089
SRR8316894Third green stage 9.210
SRR8316900Third green stage 23.875
SRR8316901Third green stage 22.666
SRR8316898Complete white stage 16.260
SRR8316899Complete white stage 33.970
SRR8316903Complete white stage 22.698
SRR8316902Silver flowering stage18.170
SRR8316904Silver flowering stage24.177
SRR8316905Silver flowering stage10.825
SRR8316906Gold flowering stage 40.707
SRR8316907Gold flowering stage 35.940
SRR8316908Gold flowering stage 34.994
SRP132670SRR6706286Control18.493
SRR6706287Light intensity 50%17.154
SRR6706288Light intensity 20%19.697
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.950
CNS0095593Slightly white alabastrum(diploid) 213.064
CNS0095594Slightly white alabastrum(diploid) 312.986
CNS0095595Whole white alabastrum(diploid) 212.948
CNS0095596Whole white alabastrum(diploid) 311.007
CNS0095597Whole white alabastrum(diploid) 412.666
CNS0095598Silvery flower (diploied) 114.117
CNS0095599Silvery flower (diploied) 214.696
CNS0095600Silvery flower (diploied) 330.373
CNS0095601Golden flower (diploid) 118.053
CNS0095602Golden flower (diploid) 231.533
CNS0095603Golden flower (diploid) 326.025
CNS0095604Slightly white alabastrum(tetraploid) 113.229
CNS0095605Slightly white alabastrum(tetraploid) 211.050
CNS0095606Slightly white alabastrum(tetraploid) 318.367
CNS0095607Whole white alabastrum(tetraploid) 111.958
CNS0095608Whole white alabastrum(tetraploid) 211.011
CNS0095609Whole white alabastrum(tetraploid) 318.048
CNS0095610Silvery flower (tetraploid) 126.806
CNS0095611Silvery flower (tetraploid) 229.191
CNS0095612Silvery flower (tetraploid) 330.282
CNS0095613Golden flower (tetraploid) 119.025
CNS0095614Golden flower (tetraploid) 222.603
CNS0095615Golden flower (tetraploid) 330.670
CRA001975CRR073297Stem 117.977
CRR073298Stem 216.878
CRR073299Stem 313.285
CRR073300Leaf 115.745
CRR073301Leaf 215.161
CRR073302Leaf 313.614
CRR073303Juvenile bud 115.211
CRR073304Juvenile bud 215.057
CRR073305Juvenile bud 318.650
CRR073306Third green 118.006
CRR073307Third green 214.802
CRR073308Third green 314.997
CRR073309Second white 117.846
CRR073310Second white 223.876
CRR073311Second white 325.880
CRR073312Silver flowering 116.914
CRR073313Silver flowering 215.937
CRR073314Silver flowering 317.324
CRR073315Gold flowering 114.014
CRR073316Gold flowering 218.051
CRR073317Gold flowering 310.369
CRR073318Tawny withering 118.736
CRR073319Tawny withering 219.112
CRR073320Tawny withering 319.367