Detail information of GWHGAAZE012285


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649528.10PREDICTED: bromodomain and WD repeat-containing protein 3 isoform X2 [Vitis vinifera]
Swissprottr|Q3Y8L7|DAW1_CHLRE4E-19Dynein assembly factor with WDR repeat domains 1
trEMBLtr|F6H734|F6H734_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47981.1}
TAIR10AT5G49430.10WD40/YVTN repeat-like-containing domain;Bromodomain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8297503282989716-
GWHAAZE00000003mRNA8297503282989716-
GWHAAZE00000003exon8297503282975224-
GWHAAZE00000003exon8297575582975813-
GWHAAZE00000003exon8297590982976481-
GWHAAZE00000003exon8297757882979401-
GWHAAZE00000003exon8297986482980249-
GWHAAZE00000003exon8298035382980407-
GWHAAZE00000003exon8298176182981820-
GWHAAZE00000003exon8298240782982503-
GWHAAZE00000003exon8298263482982704-
GWHAAZE00000003exon8298280682982886-
GWHAAZE00000003exon8298311482983184-
GWHAAZE00000003exon8298375282983920-
GWHAAZE00000003exon8298405982984137-
GWHAAZE00000003exon8298428482984361-
GWHAAZE00000003exon8298444682984549-
GWHAAZE00000003exon8298463682984751-
GWHAAZE00000003exon8298483982984933-
GWHAAZE00000003exon8298690482987010-
GWHAAZE00000003exon8298710082987177-
GWHAAZE00000003exon8298726182987370-
GWHAAZE00000003exon8298797982988215-
GWHAAZE00000003exon8298844282988596-
GWHAAZE00000003exon8298937082989716-
GWHAAZE00000003CDS8298937082989716-
GWHAAZE00000003CDS8298844282988596-
GWHAAZE00000003CDS8298797982988215-
GWHAAZE00000003CDS8298726182987370-
GWHAAZE00000003CDS8298710082987177-
GWHAAZE00000003CDS8298690482987010-
GWHAAZE00000003CDS8298483982984933-
GWHAAZE00000003CDS8298463682984751-
GWHAAZE00000003CDS8298444682984549-
GWHAAZE00000003CDS8298428482984361-
GWHAAZE00000003CDS8298405982984137-
GWHAAZE00000003CDS8298375282983920-
GWHAAZE00000003CDS8298311482983184-
GWHAAZE00000003CDS8298280682982886-
GWHAAZE00000003CDS8298263482982704-
GWHAAZE00000003CDS8298240782982503-
GWHAAZE00000003CDS8298176182981820-
GWHAAZE00000003CDS8298035382980407-
GWHAAZE00000003CDS8297986482980249-
GWHAAZE00000003CDS8297757882979401-
GWHAAZE00000003CDS8297590982976481-
GWHAAZE00000003CDS8297575582975813-
GWHAAZE00000003CDS8297503282975224-
Transcript Sequence

Network for GWHGAAZE012285

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402322692.90E-06
PF00400.33WD402753101.80E-06
PF00400.33WD403173562.20E-06
PF00400.33WD403904180.0099
PF00400.33WD405706090.094
PF00439.26Bromodomain164616972.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.641
SRR3591706second leaf12.822
SRR3591707mature leaf12.589
SRR3591708Shoot apex15.407
SRR3591709Stem12.695
SRR3591710White floral bud12.377
SRR3591711White flower15.113
SRR3591712Green floral bud12.648
SRR3591713Yellow flower12.244
SRP173429 SRR8316895Juvenile bud stage 9.785
SRR8316896Juvenile bud stage 13.058
SRR8316897Juvenile bud stage 6.735
SRR8316894Third green stage 5.712
SRR8316900Third green stage 11.165
SRR8316901Third green stage 11.481
SRR8316898Complete white stage 2.328
SRR8316899Complete white stage 10.739
SRR8316903Complete white stage 7.880
SRR8316902Silver flowering stage4.907
SRR8316904Silver flowering stage8.731
SRR8316905Silver flowering stage4.010
SRR8316906Gold flowering stage 14.147
SRR8316907Gold flowering stage 13.015
SRR8316908Gold flowering stage 12.563
SRP132670SRR6706286Control9.501
SRR6706287Light intensity 50%10.422
SRR6706288Light intensity 20%10.789
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.191
CNS0095593Slightly white alabastrum(diploid) 27.076
CNS0095594Slightly white alabastrum(diploid) 38.138
CNS0095595Whole white alabastrum(diploid) 28.819
CNS0095596Whole white alabastrum(diploid) 37.667
CNS0095597Whole white alabastrum(diploid) 49.239
CNS0095598Silvery flower (diploied) 110.110
CNS0095599Silvery flower (diploied) 26.424
CNS0095600Silvery flower (diploied) 313.246
CNS0095601Golden flower (diploid) 19.107
CNS0095602Golden flower (diploid) 214.701
CNS0095603Golden flower (diploid) 314.994
CNS0095604Slightly white alabastrum(tetraploid) 110.210
CNS0095605Slightly white alabastrum(tetraploid) 28.458
CNS0095606Slightly white alabastrum(tetraploid) 316.268
CNS0095607Whole white alabastrum(tetraploid) 18.918
CNS0095608Whole white alabastrum(tetraploid) 27.435
CNS0095609Whole white alabastrum(tetraploid) 312.027
CNS0095610Silvery flower (tetraploid) 112.675
CNS0095611Silvery flower (tetraploid) 211.792
CNS0095612Silvery flower (tetraploid) 310.108
CNS0095613Golden flower (tetraploid) 17.452
CNS0095614Golden flower (tetraploid) 210.249
CNS0095615Golden flower (tetraploid) 314.268
CRA001975CRR073297Stem 114.532
CRR073298Stem 212.975
CRR073299Stem 37.789
CRR073300Leaf 112.022
CRR073301Leaf 210.712
CRR073302Leaf 36.442
CRR073303Juvenile bud 15.743
CRR073304Juvenile bud 23.371
CRR073305Juvenile bud 37.916
CRR073306Third green 12.556
CRR073307Third green 21.501
CRR073308Third green 32.535
CRR073309Second white 12.400
CRR073310Second white 24.479
CRR073311Second white 35.391
CRR073312Silver flowering 14.198
CRR073313Silver flowering 25.295
CRR073314Silver flowering 34.148
CRR073315Gold flowering 13.029
CRR073316Gold flowering 28.453
CRR073317Gold flowering 32.946
CRR073318Tawny withering 17.814
CRR073319Tawny withering 27.259
CRR073320Tawny withering 37.171