Detail information of GWHGAAZE012290


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009767911.15.53193E-88PREDICTED: probable ribosome biogenesis protein RLP24 [Nicotiana sylvestris]
Swissprottr|O22165|RLP24_ARATH4E-76Probable ribosome biogenesis protein RLP24
trEMBLtr|A0A068UG16|A0A068UG16_COFCA4E-88Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06578.1}
TAIR10AT2G44860.23E-56Ribosomal protein L24e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8311051483111610+
GWHAAZE00000003mRNA8311051483111610+
GWHAAZE00000003exon8311051483110594+
GWHAAZE00000003exon8311094383111056+
GWHAAZE00000003exon8311114383111279+
GWHAAZE00000003exon8311145783111610+
GWHAAZE00000003CDS8311051483110594+
GWHAAZE00000003CDS8311094383111056+
GWHAAZE00000003CDS8311114383111279+
GWHAAZE00000003CDS8311145783111610+
Transcript Sequence

Network for GWHGAAZE012290

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01246.21Ribosomal_L24e1655.40E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02896RP-L24e, RPL24 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf118.147
SRR3591706second leaf69.703
SRR3591707mature leaf63.545
SRR3591708Shoot apex131.113
SRR3591709Stem91.765
SRR3591710White floral bud120.120
SRR3591711White flower111.426
SRR3591712Green floral bud130.803
SRR3591713Yellow flower125.072
SRP173429 SRR8316895Juvenile bud stage 71.188
SRR8316896Juvenile bud stage 95.700
SRR8316897Juvenile bud stage 49.655
SRR8316894Third green stage 45.928
SRR8316900Third green stage 136.912
SRR8316901Third green stage 134.958
SRR8316898Complete white stage 43.378
SRR8316899Complete white stage 128.313
SRR8316903Complete white stage 70.461
SRR8316902Silver flowering stage47.924
SRR8316904Silver flowering stage50.417
SRR8316905Silver flowering stage31.321
SRR8316906Gold flowering stage 92.448
SRR8316907Gold flowering stage 96.584
SRR8316908Gold flowering stage 97.316
SRP132670SRR6706286Control139.865
SRR6706287Light intensity 50%142.120
SRR6706288Light intensity 20%150.359
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1111.135
CNS0095593Slightly white alabastrum(diploid) 297.655
CNS0095594Slightly white alabastrum(diploid) 3122.362
CNS0095595Whole white alabastrum(diploid) 294.060
CNS0095596Whole white alabastrum(diploid) 393.958
CNS0095597Whole white alabastrum(diploid) 4102.401
CNS0095598Silvery flower (diploied) 175.857
CNS0095599Silvery flower (diploied) 271.602
CNS0095600Silvery flower (diploied) 388.010
CNS0095601Golden flower (diploid) 168.339
CNS0095602Golden flower (diploid) 270.598
CNS0095603Golden flower (diploid) 371.893
CNS0095604Slightly white alabastrum(tetraploid) 1104.246
CNS0095605Slightly white alabastrum(tetraploid) 2100.826
CNS0095606Slightly white alabastrum(tetraploid) 3117.488
CNS0095607Whole white alabastrum(tetraploid) 183.307
CNS0095608Whole white alabastrum(tetraploid) 284.343
CNS0095609Whole white alabastrum(tetraploid) 3101.139
CNS0095610Silvery flower (tetraploid) 192.628
CNS0095611Silvery flower (tetraploid) 283.765
CNS0095612Silvery flower (tetraploid) 368.601
CNS0095613Golden flower (tetraploid) 168.587
CNS0095614Golden flower (tetraploid) 274.265
CNS0095615Golden flower (tetraploid) 373.736
CRA001975CRR073297Stem 1118.872
CRR073298Stem 2103.205
CRR073299Stem 3126.186
CRR073300Leaf 1126.643
CRR073301Leaf 2137.102
CRR073302Leaf 3133.076
CRR073303Juvenile bud 1115.638
CRR073304Juvenile bud 292.037
CRR073305Juvenile bud 3124.008
CRR073306Third green 155.211
CRR073307Third green 274.774
CRR073308Third green 370.057
CRR073309Second white 170.714
CRR073310Second white 284.002
CRR073311Second white 367.352
CRR073312Silver flowering 183.050
CRR073313Silver flowering 282.793
CRR073314Silver flowering 379.525
CRR073315Gold flowering 175.577
CRR073316Gold flowering 253.588
CRR073317Gold flowering 353.806
CRR073318Tawny withering 1142.914
CRR073319Tawny withering 2110.834
CRR073320Tawny withering 3129.582