Gene detail

Detail information of GWHGAAZE012294

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278263.1	0	PREDICTED: phytochrome B [Vitis vinifera]
Swissprot	tr\|Q9ZS62\|PHYB1_SOLLC	0	Phytochrome B1
trEMBL	tr\|F6H723\|F6H723_VITVI	0	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}
TAIR10	AT2G18790.1	1E-174	phytochrome B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83141758	83142855	+
GWHAAZE00000003	mRNA	83141758	83142855	+
GWHAAZE00000003	exon	83141758	83142855	+
GWHAAZE00000003	CDS	83141758	83142855	+

Transcript Sequence
>GWHTAAZE012308 ATGGCTTCAGGTAGCAAAAGCTCACATGCCAATCACCCATCCAAATCTCAACCTCAGTCCTCAAATACAAGCAATGTTAGGGATCATTCAGTTAGTAAAGCCATTGCTCAGTACACAGTTGATGCTCGTCTTCACGCAGTGTTTGAACAATCAGGCGAATCAGGTAAATCTTTTGATTATTCCCAATCCGTTAGAACAACCACTCAATCTGTTCCCGAACAACAAATCACTGCTTATTTATCCAAGATTCAAAGAGGAGGACATATTCAACCCTTTGGTTGCATGATTTCTGTTGATGAATCCACTTTTAGGGTTATTGCCTTCAGCGAAAATGCCCGAGAAATGCTTGCTTTAACGCCCCAATCCGTCCCCAGTCTCGAAAAACCCGAGATACTCACAATTGGGACCGATGCTAGGTCTCTTTTTACTCCTTCGAGTGCAATTCTGCTCGAGAGGGCATTTGGGGCAAGGGATATAACGTTATTGAACCCGGTTTGGGTTCATTCGAGGAATTCTGGGAAACCCTTTTATGCAATTTTGCATAGGATTGATGTGGGGATTGTCGTTGATTTGGAGCCTGCTAGAACAGAGGACCCTGCTCTGTCTATAGCAGGAGCTGTACAATCTCAGAAGCTTGCCGTGAGGGCCATTTCGCATTTGCAGTCGCTTCCTGGTGGGGATATTAAGCTTTTGTGTGATACTGTGGTTGAAAATGTGAGGGAGCTCACGGGTTATGATCGGGTAATGGTGTATAAGTTTCATGAGGATGAACATGGTGAGGTGTTGGCCGAGAGCAAAAGGCCGGATTTGGATCCGTATATTGGGTTGCACTATCCTGCTACTGATATTCCTCAAGCGTCAAGATTTTTGTTTAGACAGAACCGGGTTAGGATGATTGTTGATTGCCACGCCACTCCGGTTCGTGTAATTCAGGATGATGCACTCATGCAGCCTCTATGTTTAGTTGGTTCGACCCTTCGGGGTCCTCACGGTTGCCATGCCCAGTACATGGCCAACATGGGTTCGATCGCCTCGTTAGCCATGGCGGTGATCATAAACGGAAATGATGAGGAGACATCTGGGGAGGAACTTCGATGA

Network for GWHGAAZE012294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08446.12	PAS_2	78	194	7.60E-43
PF01590.27	GAF	227	354	2.00E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12121	PHYB	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0018298	biological_process	protein-chromophore linkage
GO:0009584	biological_process	detection of visible light
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.143
	SRR3591706	second leaf	16.345
	SRR3591707	mature leaf	25.533
	SRR3591708	Shoot apex	14.358
	SRR3591709	Stem	17.145
	SRR3591710	White floral bud	21.677
	SRR3591711	White flower	23.723
	SRR3591712	Green floral bud	18.570
	SRR3591713	Yellow flower	14.155
SRP173429	SRR8316895	Juvenile bud stage	11.331
	SRR8316896	Juvenile bud stage	13.600
	SRR8316897	Juvenile bud stage	5.232
	SRR8316894	Third green stage	7.674
	SRR8316900	Third green stage	17.030
	SRR8316901	Third green stage	13.683
	SRR8316898	Complete white stage	4.770
	SRR8316899	Complete white stage	16.655
	SRR8316903	Complete white stage	13.788
	SRR8316902	Silver flowering stage	7.962
	SRR8316904	Silver flowering stage	17.085
	SRR8316905	Silver flowering stage	7.684
	SRR8316906	Gold flowering stage	27.458
	SRR8316907	Gold flowering stage	21.430
	SRR8316908	Gold flowering stage	25.001
SRP132670	SRR6706286	Control	24.113
	SRR6706287	Light intensity 50%	24.035
	SRR6706288	Light intensity 20%	26.610
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.674
	CNS0095593	Slightly white alabastrum(diploid) 2	3.526
	CNS0095594	Slightly white alabastrum(diploid) 3	4.717
	CNS0095595	Whole white alabastrum(diploid) 2	5.527
	CNS0095596	Whole white alabastrum(diploid) 3	4.056
	CNS0095597	Whole white alabastrum(diploid) 4	4.502
	CNS0095598	Silvery flower (diploied) 1	10.555
	CNS0095599	Silvery flower (diploied) 2	7.159
	CNS0095600	Silvery flower (diploied) 3	27.305
	CNS0095601	Golden flower (diploid) 1	11.883
	CNS0095602	Golden flower (diploid) 2	30.544
	CNS0095603	Golden flower (diploid) 3	29.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.241
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.394
	CNS0095610	Silvery flower (tetraploid) 1	25.056
	CNS0095611	Silvery flower (tetraploid) 2	36.875
	CNS0095612	Silvery flower (tetraploid) 3	23.355
	CNS0095613	Golden flower (tetraploid) 1	6.267
	CNS0095614	Golden flower (tetraploid) 2	18.471
	CNS0095615	Golden flower (tetraploid) 3	34.124
CRA001975	CRR073297	Stem 1	19.505
	CRR073298	Stem 2	17.235
	CRR073299	Stem 3	21.006
	CRR073300	Leaf 1	17.805
	CRR073301	Leaf 2	14.879
	CRR073302	Leaf 3	12.273
	CRR073303	Juvenile bud 1	10.825
	CRR073304	Juvenile bud 2	11.769
	CRR073305	Juvenile bud 3	23.035
	CRR073306	Third green 1	40.672
	CRR073307	Third green 2	16.667
	CRR073308	Third green 3	27.834
	CRR073309	Second white 1	38.203
	CRR073310	Second white 2	43.405
	CRR073311	Second white 3	65.468
	CRR073312	Silver flowering 1	46.969
	CRR073313	Silver flowering 2	40.008
	CRR073314	Silver flowering 3	37.421
	CRR073315	Gold flowering 1	5.667
	CRR073316	Gold flowering 2	15.639
	CRR073317	Gold flowering 3	14.536
	CRR073318	Tawny withering 1	7.495
	CRR073319	Tawny withering 2	3.738
	CRR073320	Tawny withering 3	5.573