Detail information of GWHGAAZE012315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008223422.10PREDICTED: F-box protein At5g49610 [Prunus mume]
Swissprottr|Q9FGY4|FB341_ARATH0F-box protein At5g49610
trEMBLtr|M5XCY4|M5XCY4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ23311.1}
TAIR10AT5G49610.15E-146F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8346162783462715-
GWHAAZE00000003mRNA8346162783462715-
GWHAAZE00000003exon8346162783462715-
GWHAAZE00000003CDS8346162783462715-
Transcript Sequence

Network for GWHGAAZE012315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box12473.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.242
SRR3591706second leaf5.187
SRR3591707mature leaf7.205
SRR3591708Shoot apex9.521
SRR3591709Stem11.885
SRR3591710White floral bud8.124
SRR3591711White flower11.450
SRR3591712Green floral bud9.175
SRR3591713Yellow flower16.399
SRP173429 SRR8316895Juvenile bud stage 4.336
SRR8316896Juvenile bud stage 6.796
SRR8316897Juvenile bud stage 2.354
SRR8316894Third green stage 2.502
SRR8316900Third green stage 6.422
SRR8316901Third green stage 6.457
SRR8316898Complete white stage 4.743
SRR8316899Complete white stage 10.309
SRR8316903Complete white stage 7.252
SRR8316902Silver flowering stage4.598
SRR8316904Silver flowering stage5.639
SRR8316905Silver flowering stage3.040
SRR8316906Gold flowering stage 13.515
SRR8316907Gold flowering stage 9.284
SRR8316908Gold flowering stage 10.960
SRP132670SRR6706286Control4.575
SRR6706287Light intensity 50%4.394
SRR6706288Light intensity 20%4.485
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.712
CNS0095593Slightly white alabastrum(diploid) 27.759
CNS0095594Slightly white alabastrum(diploid) 37.965
CNS0095595Whole white alabastrum(diploid) 26.790
CNS0095596Whole white alabastrum(diploid) 36.082
CNS0095597Whole white alabastrum(diploid) 45.965
CNS0095598Silvery flower (diploied) 16.893
CNS0095599Silvery flower (diploied) 25.875
CNS0095600Silvery flower (diploied) 39.970
CNS0095601Golden flower (diploid) 18.160
CNS0095602Golden flower (diploid) 210.585
CNS0095603Golden flower (diploid) 310.246
CNS0095604Slightly white alabastrum(tetraploid) 18.672
CNS0095605Slightly white alabastrum(tetraploid) 27.876
CNS0095606Slightly white alabastrum(tetraploid) 311.746
CNS0095607Whole white alabastrum(tetraploid) 17.627
CNS0095608Whole white alabastrum(tetraploid) 26.127
CNS0095609Whole white alabastrum(tetraploid) 37.921
CNS0095610Silvery flower (tetraploid) 112.177
CNS0095611Silvery flower (tetraploid) 213.961
CNS0095612Silvery flower (tetraploid) 39.517
CNS0095613Golden flower (tetraploid) 18.685
CNS0095614Golden flower (tetraploid) 211.647
CNS0095615Golden flower (tetraploid) 317.767
CRA001975CRR073297Stem 15.627
CRR073298Stem 26.889
CRR073299Stem 36.713
CRR073300Leaf 16.458
CRR073301Leaf 27.539
CRR073302Leaf 34.659
CRR073303Juvenile bud 15.530
CRR073304Juvenile bud 24.513
CRR073305Juvenile bud 37.433
CRR073306Third green 11.841
CRR073307Third green 22.334
CRR073308Third green 31.806
CRR073309Second white 15.661
CRR073310Second white 24.879
CRR073311Second white 34.645
CRR073312Silver flowering 14.396
CRR073313Silver flowering 23.504
CRR073314Silver flowering 31.848
CRR073315Gold flowering 16.816
CRR073316Gold flowering 26.683
CRR073317Gold flowering 37.292
CRR073318Tawny withering 15.723
CRR073319Tawny withering 24.121
CRR073320Tawny withering 37.594