Gene detail

Detail information of GWHGAAZE012317

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002316057.2	0	serine carboxypeptidase S10 family protein [Populus trichocarpa]
Swissprot	tr\|Q9LSM9\|SCP33_ARATH	2E-157	Serine carboxypeptidase-like 33 (Precursor)
trEMBL	tr\|B9HX57\|B9HX57_POPTR	0	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}
TAIR10	AT3G17180.1	4E-126	serine carboxypeptidase-like 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83475519	83478969	-
GWHAAZE00000003	mRNA	83475519	83478969	-
GWHAAZE00000003	exon	83478864	83478969	-
GWHAAZE00000003	exon	83478661	83478753	-
GWHAAZE00000003	exon	83478461	83478549	-
GWHAAZE00000003	exon	83478005	83478289	-
GWHAAZE00000003	exon	83477367	83477518	-
GWHAAZE00000003	exon	83476827	83476922	-
GWHAAZE00000003	exon	83475993	83476098	-
GWHAAZE00000003	exon	83475519	83475665	-
GWHAAZE00000003	CDS	83478864	83478969	-
GWHAAZE00000003	CDS	83478661	83478753	-
GWHAAZE00000003	CDS	83478461	83478549	-
GWHAAZE00000003	CDS	83478005	83478289	-
GWHAAZE00000003	CDS	83477367	83477518	-
GWHAAZE00000003	CDS	83476827	83476922	-
GWHAAZE00000003	CDS	83475993	83476098	-
GWHAAZE00000003	CDS	83475519	83475665	-

Transcript Sequence
>GWHTAAZE012331 ATGAGTGCAGAAGCAAATTTGCTGTTTGTGGAGTCACCAGTTGGAGTAGGGTTCTCTTACACCAACACATCCTCTGACTTCACCAAACTGGATGATGCATTTGTGGCTGAGGATACCTACAATTTCTTGGTGAATTGGCTGCAAAGATTCCCACAATACAAGACCCATGATTTCTACATATCAGGAGAGAGTTATGCAGGACACTATGTGCCTCAATTGGCAGAGCTTGTGTATGACAGAAACAGAGGTGGAACAAAGTACCCACATATAAATCTCAAAGGTTTCATAGTAGGTAATCCAGAAACAGATGATTCATATGATTATAGAGGGATATTAGAGTATGCATGGAGCCACTCTGTAATACCAGACGGAGAGTATGAGAGGGCCAAAAAAGTATGTGATTTCAAGCTAAAAAATTGGTCTAAGGAATGTAATGAAGCCATGGGGATGGTATTTGAAAAATATGGGGAGATTGACATTTATAATATTTATGCTCCAGCATGTCCCCTCAACACTTCTACCTCTTCGTCAACATTTACTACTAGTTCCATTTATGGTGATTCTCTCACTAAGGAAGTGAATAGTTATGGATTAATGAGGAGGATGAGAAGAGTCCCCGGGGGTTATGACCCGTGTTACGATTCATACACAAAACAATACTTTAGCAGATTAGATGTTCAGAAAGCTCTCCATGCTAATCCTGGTGTCAAATACAAGGTCTGCAGTGACGATGTCATCAATGGATATAGTTTTACAGTCTCTTCTGTCCTACCCATCTACAATAAGCTGATAAAGGCTGGACTCAGAATTTGGATTTACAGTGGTGATTGTGATGGGAGAGTGCCAGTGATAGGGTCAAGATACTGCGTTGAAGCTCTCGGACTGCCTCTCAAATCCCCTTGGCGATCTTGGTTTCACCTCGGCCAGGTGGGAGGGAGGATGGTGGAGTATGAAGGCCTAACAATGGTAACTATAAGAGGGGCGGGCCATTTGGTACCTCTCAATAAACCCGACGAAGCTTTCTCCATGCTCCACTCTTTTTTATCCGGCAACCACCTCCCAACGCAGAGATGA

Network for GWHGAAZE012317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00450.23	Peptidase_S10	4	349	1.30E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004185	molecular_function	serine-type carboxypeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.060
	SRR3591706	second leaf	34.909
	SRR3591707	mature leaf	31.653
	SRR3591708	Shoot apex	29.839
	SRR3591709	Stem	23.097
	SRR3591710	White floral bud	10.048
	SRR3591711	White flower	20.127
	SRR3591712	Green floral bud	5.481
	SRR3591713	Yellow flower	1.749
SRP173429	SRR8316895	Juvenile bud stage	16.614
	SRR8316896	Juvenile bud stage	14.616
	SRR8316897	Juvenile bud stage	8.325
	SRR8316894	Third green stage	3.986
	SRR8316900	Third green stage	5.682
	SRR8316901	Third green stage	6.477
	SRR8316898	Complete white stage	2.921
	SRR8316899	Complete white stage	17.156
	SRR8316903	Complete white stage	6.605
	SRR8316902	Silver flowering stage	1.100
	SRR8316904	Silver flowering stage	1.899
	SRR8316905	Silver flowering stage	0.515
	SRR8316906	Gold flowering stage	0.668
	SRR8316907	Gold flowering stage	1.301
	SRR8316908	Gold flowering stage	3.621
SRP132670	SRR6706286	Control	8.034
	SRR6706287	Light intensity 50%	5.597
	SRR6706288	Light intensity 20%	4.603
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.762
	CNS0095593	Slightly white alabastrum(diploid) 2	8.672
	CNS0095594	Slightly white alabastrum(diploid) 3	8.116
	CNS0095595	Whole white alabastrum(diploid) 2	8.857
	CNS0095596	Whole white alabastrum(diploid) 3	3.312
	CNS0095597	Whole white alabastrum(diploid) 4	4.005
	CNS0095598	Silvery flower (diploied) 1	38.985
	CNS0095599	Silvery flower (diploied) 2	34.646
	CNS0095600	Silvery flower (diploied) 3	8.353
	CNS0095601	Golden flower (diploid) 1	28.366
	CNS0095602	Golden flower (diploid) 2	17.866
	CNS0095603	Golden flower (diploid) 3	17.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.237
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.291
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.740
	CNS0095610	Silvery flower (tetraploid) 1	12.444
	CNS0095611	Silvery flower (tetraploid) 2	10.171
	CNS0095612	Silvery flower (tetraploid) 3	2.195
	CNS0095613	Golden flower (tetraploid) 1	4.370
	CNS0095614	Golden flower (tetraploid) 2	10.052
	CNS0095615	Golden flower (tetraploid) 3	1.542
CRA001975	CRR073297	Stem 1	9.945
	CRR073298	Stem 2	6.284
	CRR073299	Stem 3	8.915
	CRR073300	Leaf 1	3.145
	CRR073301	Leaf 2	4.610
	CRR073302	Leaf 3	2.640
	CRR073303	Juvenile bud 1	2.611
	CRR073304	Juvenile bud 2	1.088
	CRR073305	Juvenile bud 3	3.400
	CRR073306	Third green 1	0.587
	CRR073307	Third green 2	0.270
	CRR073308	Third green 3	1.403
	CRR073309	Second white 1	0.327
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.492
	CRR073315	Gold flowering 1	23.656
	CRR073316	Gold flowering 2	31.976
	CRR073317	Gold flowering 3	16.277
	CRR073318	Tawny withering 1	10.815
	CRR073319	Tawny withering 2	8.196
	CRR073320	Tawny withering 3	8.236