Gene detail

Detail information of GWHGAAZE012320

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002316060.2	5.444E-143	hypothetical protein POPTR_0010s15970g [Populus trichocarpa]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	5E-88	Transcription factor MYB108
trEMBL	tr\|B9HX62\|B9HX62_POPTR	2E-143	Uncharacterized protein {ECO:0000313\|EMBL:EEF02231.2}
TAIR10	AT5G49620.1	2E-66	myb domain protein 78

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83579063	83580597	-
GWHAAZE00000003	mRNA	83579063	83580597	-
GWHAAZE00000003	exon	83579063	83579735	-
GWHAAZE00000003	exon	83579851	83579980	-
GWHAAZE00000003	exon	83580426	83580597	-
GWHAAZE00000003	CDS	83580426	83580597	-
GWHAAZE00000003	CDS	83579851	83579980	-
GWHAAZE00000003	CDS	83579063	83579735	-

Transcript Sequence
>GWHTAAZE012334 ATGGATGTTGAGGGAAGAAACAACACTGCTCGAAATTACGACGTACAAAGCGAAGAAGAAGAGATGACGGATCTTAGAAGAGGTCCATGGACCGTCGAAGAAGATTTCGCTCTCATCAATTACATCGCACACCATGGCGAAGGCCGCTGGAATTCTCTTGCTCGCTCTGCTGGTTTAAAGAGGACCGGAAAGAGCTGCAGATTAAGATGGCTGAACTATTTGCGACCAGATGTTCGACGCGGAGATATCACACTTGAAGAACAGCTCTTGATTCTCGAACTTCATTCTCGTTGGGGCAATCGGTGGTCGAAAATAGCACAACACTTGCCTGGAAGAACGGACAACGAGATAAAGAATTATTGGAGAACGCGAGTACAAAAGCACGCCAAGCAACTCAAGTGCGATGTGAACAGCAAGCAATTTAAGGACACAATGCGTTATCTTTGGATGCCGAGGTTGGTCGAGAGAATTCAGGCAGCTGCTGCCACTACCAAAGCTTCCTCCACTACCCCTGCCACCACCTCAGCCGCCAACTCCGCCACCAATAATTATAACATCAACAACATGGATATTAGTAGTACGGGCCAATTGGTAATGCCACATGCTAATGATAATATTGGCAACTTAGGGGGTATACAGGTAATTAATCGCAACTTCACGTCTGAGAGTTCAAGTACAGCAGTCTCATCCGACTCTTTTGGGAGATCAGAAATTTCTCCAGTTTCAGACTTAACAGACTGTTACAGTTATCCTGTTAGTCACGACTGTAATCAAGATTATCTACCAGCTAATCACTTTGGATTATCTGAATCGCTAATAAGCCCCTCTGGTTACTACAATCAAGGCTTAAACTTCCAACAGATGGATCAAAACAACTCATGGGTGGTTTCGGACGACGTTGGGGGCGTATCGGACAATTTGTGGAATGACGAGGACATTTGGTTCTTGCAGCAACAATTCAACAACAATGTTTGA

Network for GWHGAAZE012320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	27	74	6.60E-15
PF00249.32	Myb_DNA-binding	80	123	3.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.352
	SRR3591706	second leaf	0.051
	SRR3591707	mature leaf	1.195
	SRR3591708	Shoot apex	1.441
	SRR3591709	Stem	7.018
	SRR3591710	White floral bud	4.135
	SRR3591711	White flower	157.292
	SRR3591712	Green floral bud	0.427
	SRR3591713	Yellow flower	570.464
SRP173429	SRR8316895	Juvenile bud stage	0.089
	SRR8316896	Juvenile bud stage	0.128
	SRR8316897	Juvenile bud stage	0.679
	SRR8316894	Third green stage	0.121
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.174
	SRR8316898	Complete white stage	0.087
	SRR8316899	Complete white stage	0.464
	SRR8316903	Complete white stage	0.595
	SRR8316902	Silver flowering stage	29.090
	SRR8316904	Silver flowering stage	26.899
	SRR8316905	Silver flowering stage	18.753
	SRR8316906	Gold flowering stage	249.189
	SRR8316907	Gold flowering stage	247.259
	SRR8316908	Gold flowering stage	224.952
SRP132670	SRR6706286	Control	0.802
	SRR6706287	Light intensity 50%	0.568
	SRR6706288	Light intensity 20%	0.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.788
	CNS0095593	Slightly white alabastrum(diploid) 2	0.362
	CNS0095594	Slightly white alabastrum(diploid) 3	0.619
	CNS0095595	Whole white alabastrum(diploid) 2	0.459
	CNS0095596	Whole white alabastrum(diploid) 3	0.956
	CNS0095597	Whole white alabastrum(diploid) 4	0.579
	CNS0095598	Silvery flower (diploied) 1	20.771
	CNS0095599	Silvery flower (diploied) 2	14.778
	CNS0095600	Silvery flower (diploied) 3	47.637
	CNS0095601	Golden flower (diploid) 1	70.187
	CNS0095602	Golden flower (diploid) 2	223.131
	CNS0095603	Golden flower (diploid) 3	211.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.035
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.300
	CNS0095610	Silvery flower (tetraploid) 1	61.642
	CNS0095611	Silvery flower (tetraploid) 2	31.604
	CNS0095612	Silvery flower (tetraploid) 3	70.750
	CNS0095613	Golden flower (tetraploid) 1	292.969
	CNS0095614	Golden flower (tetraploid) 2	220.864
	CNS0095615	Golden flower (tetraploid) 3	254.548
CRA001975	CRR073297	Stem 1	0.651
	CRR073298	Stem 2	0.116
	CRR073299	Stem 3	0.197
	CRR073300	Leaf 1	0.429
	CRR073301	Leaf 2	0.289
	CRR073302	Leaf 3	0.444
	CRR073303	Juvenile bud 1	0.170
	CRR073304	Juvenile bud 2	0.170
	CRR073305	Juvenile bud 3	0.327
	CRR073306	Third green 1	7.189
	CRR073307	Third green 2	4.402
	CRR073308	Third green 3	5.120
	CRR073309	Second white 1	166.922
	CRR073310	Second white 2	279.493
	CRR073311	Second white 3	238.294
	CRR073312	Silver flowering 1	421.691
	CRR073313	Silver flowering 2	392.852
	CRR073314	Silver flowering 3	418.212
	CRR073315	Gold flowering 1	0.047
	CRR073316	Gold flowering 2	0.884
	CRR073317	Gold flowering 3	0.962
	CRR073318	Tawny withering 1	3.784
	CRR073319	Tawny withering 2	12.242
	CRR073320	Tawny withering 3	1.721