Gene detail

Detail information of GWHGAAZE012323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P29344.1RR1_SPIOL	0	RecName: Full=30S ribosomal protein S1, chloroplastic; AltName: Full=CS1; Flags: Precursor [Spinacia oleracea]
Swissprot	tr\|P29344\|RR1_SPIOL	0	30S ribosomal protein S1, chloroplastic (Precursor)
trEMBL	tr\|W9RV42\|W9RV42_9ROSA	0	30S ribosomal protein S1 {ECO:0000313\|EMBL:EXB94381.1}
TAIR10	AT5G30510.1	3E-147	ribosomal protein S1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83640983	83644017	+
GWHAAZE00000003	mRNA	83640983	83644017	+
GWHAAZE00000003	exon	83640983	83641288	+
GWHAAZE00000003	exon	83642008	83642088	+
GWHAAZE00000003	exon	83642188	83642469	+
GWHAAZE00000003	exon	83642758	83642868	+
GWHAAZE00000003	exon	83643443	83643529	+
GWHAAZE00000003	exon	83643901	83644017	+
GWHAAZE00000003	CDS	83640983	83641288	+
GWHAAZE00000003	CDS	83642008	83642088	+
GWHAAZE00000003	CDS	83642188	83642469	+
GWHAAZE00000003	CDS	83642758	83642868	+
GWHAAZE00000003	CDS	83643443	83643529	+
GWHAAZE00000003	CDS	83643901	83644017	+

Transcript Sequence
>GWHTAAZE012337 ATGATGAAATCATCAACCTACATTTTTCAGGTGAAAGGAACTGTTTTTCATACAGATGGTAATGGGGCATTAATTGACATCATGGCAAAATCTGCCGCATACTTACCAGTTGAAGAGGCATCCATTTACGATTTAAGGTCTGTGGAAGAGGCAGGCATAGTTCCTGGTATATGTGATGAGTTTGTAATTATTGACGAAAATGAATATGATGATAGCTTGATCTTGAGCTTGCGGTCAGCTCAGAATGACCTTGCATGGGAACGATGCAGGCAGCTTCAATCTGAAGATGTTCTTGTCAAGGGTATGGTTGTTGGTGCAAACAAAGGTGGAGTTGTAGCAATGGTGGAAGGCCTTAGTGGATTTGTTCCATTCTCACAGATATCGATTATATCAGAACCAGAAGAGCTTTTTGAGAAGGAAATTCCGCTCAAGTTTGTGGAGGTAGATGAAGAAATGTCTAGGCTTGTTCTCAGTAACCGCAAAGCCATGGCTGATAGCCAGGCTCAGCTCGGAATTGGGTCGGTGGTCACTGGAACTGTTCAAAGCTTAAAACCTTATGGTGCTTTTATCGATATTGGTGGGGTCAATGGTCTTCTTCATGTTAGCCAGATCAGTCATGATCGCGTCTCAGATATAGCAACTGTCCTTCAACCTGGCGACACTCTCAAGGTGATGATACTGAGCCACGACCGCGAGAGAGGCCGAGTGAGTCTCTCTACAAAGAAATTAGAGCCTACTCCTGGTGACATGATTCGCAACCCAAAGCTTGTGTTTGAGAAGGCAGAGGAGATGGCCCAGACATTCAGGCAGAGAATTGCTCAAGCTGAAGCCATGGCTCGTGCCGACATGCTCAGATTCCAGCCCGAGGGTGGCTTGACTCTAAGCTCAGACGGGATATTAGGGCCGCTGGCTTCAGACTTCCCAGCTGTAGAGTCTGATGAAGGTTTTGATTTGAGCGAAATTCCCCCTGCTGATGATTTATGA

Network for GWHGAAZE012323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.24	S1	98	158	4.00E-05
PF00575.24	S1	172	241	6.80E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02945	RP-S1, rpsA	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	148.773
	SRR3591706	second leaf	305.444
	SRR3591707	mature leaf	288.971
	SRR3591708	Shoot apex	224.878
	SRR3591709	Stem	59.102
	SRR3591710	White floral bud	35.167
	SRR3591711	White flower	39.620
	SRR3591712	Green floral bud	44.239
	SRR3591713	Yellow flower	58.715
SRP173429	SRR8316895	Juvenile bud stage	76.412
	SRR8316896	Juvenile bud stage	85.703
	SRR8316897	Juvenile bud stage	53.177
	SRR8316894	Third green stage	37.613
	SRR8316900	Third green stage	105.021
	SRR8316901	Third green stage	99.070
	SRR8316898	Complete white stage	34.890
	SRR8316899	Complete white stage	83.553
	SRR8316903	Complete white stage	54.074
	SRR8316902	Silver flowering stage	27.632
	SRR8316904	Silver flowering stage	38.045
	SRR8316905	Silver flowering stage	20.357
	SRR8316906	Gold flowering stage	70.886
	SRR8316907	Gold flowering stage	65.124
	SRR8316908	Gold flowering stage	80.994
SRP132670	SRR6706286	Control	99.957
	SRR6706287	Light intensity 50%	88.966
	SRR6706288	Light intensity 20%	93.557
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	76.834
	CNS0095593	Slightly white alabastrum(diploid) 2	66.467
	CNS0095594	Slightly white alabastrum(diploid) 3	58.970
	CNS0095595	Whole white alabastrum(diploid) 2	53.090
	CNS0095596	Whole white alabastrum(diploid) 3	63.844
	CNS0095597	Whole white alabastrum(diploid) 4	43.241
	CNS0095598	Silvery flower (diploied) 1	95.978
	CNS0095599	Silvery flower (diploied) 2	97.478
	CNS0095600	Silvery flower (diploied) 3	111.360
	CNS0095601	Golden flower (diploid) 1	117.297
	CNS0095602	Golden flower (diploid) 2	134.320
	CNS0095603	Golden flower (diploid) 3	125.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.276
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.772
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.353
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.005
	CNS0095610	Silvery flower (tetraploid) 1	82.024
	CNS0095611	Silvery flower (tetraploid) 2	100.939
	CNS0095612	Silvery flower (tetraploid) 3	74.808
	CNS0095613	Golden flower (tetraploid) 1	57.299
	CNS0095614	Golden flower (tetraploid) 2	73.865
	CNS0095615	Golden flower (tetraploid) 3	80.891
CRA001975	CRR073297	Stem 1	172.079
	CRR073298	Stem 2	156.737
	CRR073299	Stem 3	201.361
	CRR073300	Leaf 1	102.203
	CRR073301	Leaf 2	123.373
	CRR073302	Leaf 3	116.848
	CRR073303	Juvenile bud 1	122.777
	CRR073304	Juvenile bud 2	88.480
	CRR073305	Juvenile bud 3	131.700
	CRR073306	Third green 1	41.670
	CRR073307	Third green 2	29.236
	CRR073308	Third green 3	33.532
	CRR073309	Second white 1	106.211
	CRR073310	Second white 2	65.227
	CRR073311	Second white 3	67.129
	CRR073312	Silver flowering 1	97.330
	CRR073313	Silver flowering 2	96.391
	CRR073314	Silver flowering 3	81.795
	CRR073315	Gold flowering 1	504.130
	CRR073316	Gold flowering 2	569.899
	CRR073317	Gold flowering 3	426.423
	CRR073318	Tawny withering 1	124.003
	CRR073319	Tawny withering 2	103.550
	CRR073320	Tawny withering 3	96.863