Gene detail

Detail information of GWHGAAZE012336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280106.1	0	PREDICTED: S-adenosylmethionine synthase 5 [Vitis vinifera]
Swissprot	tr\|A7Q0V4\|METK5_VITVI	0	S-adenosylmethionine synthase 5
trEMBL	tr\|F6HZE2\|F6HZE2_VITVI	0	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT1G02500.2	6E-132	S-adenosylmethionine synthetase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83932157	83932921	-
GWHAAZE00000003	mRNA	83932157	83932921	-
GWHAAZE00000003	exon	83932157	83932921	-
GWHAAZE00000003	CDS	83932157	83932921	-

Transcript Sequence
>GWHTAAZE012350 ATGCCCCTTAGCCATGTCCTTGCAACCAAGCTTGGTGCCCGGTTAACCGAAGTCCGAAAGAATGGCACTTGCGCTTGGCTCCGGCCCGATGGTAAAACCCAAGTTACCGTTGAGTACCACAATGACAATGGTGCTATGGTTCCCCTTCGTGTCCACACCATTTTGATCTCCACTCAGCACGACGAGACCGTCACTAATGACGAGATTGCTGCCGATCTTAAAGAGCATGTCATCAAGCCCGTAGTTCCCGAGAAGTACCTAGATGAAAAGACCATTTTCCACCTTAACCCATCCGGCCGGTTTGTCATCGGTGGACCACATGGTGATGCTGGGCTTACTGGCCGCAAGATCATCATTGACACTTACGGTGGTTGGGGTGCTCACGGAGGCGGTGCCTTCTCCGGGAAGGACCCCACCAAGGTGGATAGGAGTGGGGCCTACATCGTGAGGCAAGCCGCCAAGAGTATTGTGGCTAATGGGCTTGCTCGACGGTGCATTGTCCAGGTTTCTTATGCCATTGGTGTTCCAGAGCCATTGTCGGTTTTTGTTGATACGTATGGAACCGGAAAGATACCCGACAAGGAGATTCTGAAGATTGTGAAGGAGACTTTTGATTTCAGGCCGGGAATGATCTCGATAAACCTTGACCTCAAGAGGGGTGGCAATGGTAGGTTCTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGATGACCCCGACTTCACATGGGAAGTGGTAAAGCCCCTTAAGTGGGAGAAGGCATAA

Network for GWHGAAZE012336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02772.17	S-AdoMet_synt_M	1	101	1.60E-32
PF02773.17	S-AdoMet_synt_C	103	244	3.40E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	880.460
	SRR3591706	second leaf	581.331
	SRR3591707	mature leaf	142.237
	SRR3591708	Shoot apex	394.347
	SRR3591709	Stem	3200.448
	SRR3591710	White floral bud	318.679
	SRR3591711	White flower	271.107
	SRR3591712	Green floral bud	341.924
	SRR3591713	Yellow flower	248.692
SRP173429	SRR8316895	Juvenile bud stage	358.712
	SRR8316896	Juvenile bud stage	299.735
	SRR8316897	Juvenile bud stage	144.717
	SRR8316894	Third green stage	101.248
	SRR8316900	Third green stage	351.750
	SRR8316901	Third green stage	357.500
	SRR8316898	Complete white stage	167.577
	SRR8316899	Complete white stage	510.077
	SRR8316903	Complete white stage	214.144
	SRR8316902	Silver flowering stage	167.945
	SRR8316904	Silver flowering stage	217.743
	SRR8316905	Silver flowering stage	132.624
	SRR8316906	Gold flowering stage	333.024
	SRR8316907	Gold flowering stage	352.668
	SRR8316908	Gold flowering stage	652.831
SRP132670	SRR6706286	Control	309.289
	SRR6706287	Light intensity 50%	343.532
	SRR6706288	Light intensity 20%	389.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	400.022
	CNS0095593	Slightly white alabastrum(diploid) 2	570.030
	CNS0095594	Slightly white alabastrum(diploid) 3	440.922
	CNS0095595	Whole white alabastrum(diploid) 2	447.603
	CNS0095596	Whole white alabastrum(diploid) 3	251.742
	CNS0095597	Whole white alabastrum(diploid) 4	318.898
	CNS0095598	Silvery flower (diploied) 1	306.746
	CNS0095599	Silvery flower (diploied) 2	359.114
	CNS0095600	Silvery flower (diploied) 3	318.689
	CNS0095601	Golden flower (diploid) 1	224.681
	CNS0095602	Golden flower (diploid) 2	230.470
	CNS0095603	Golden flower (diploid) 3	227.496
	CNS0095604	Slightly white alabastrum(tetraploid) 1	290.869
	CNS0095605	Slightly white alabastrum(tetraploid) 2	259.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	754.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	214.287
	CNS0095608	Whole white alabastrum(tetraploid) 2	182.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	463.608
	CNS0095610	Silvery flower (tetraploid) 1	277.941
	CNS0095611	Silvery flower (tetraploid) 2	247.207
	CNS0095612	Silvery flower (tetraploid) 3	473.261
	CNS0095613	Golden flower (tetraploid) 1	184.474
	CNS0095614	Golden flower (tetraploid) 2	214.639
	CNS0095615	Golden flower (tetraploid) 3	71.950
CRA001975	CRR073297	Stem 1	571.955
	CRR073298	Stem 2	430.381
	CRR073299	Stem 3	506.650
	CRR073300	Leaf 1	570.965
	CRR073301	Leaf 2	654.422
	CRR073302	Leaf 3	681.782
	CRR073303	Juvenile bud 1	853.527
	CRR073304	Juvenile bud 2	741.481
	CRR073305	Juvenile bud 3	885.904
	CRR073306	Third green 1	1076.056
	CRR073307	Third green 2	1015.733
	CRR073308	Third green 3	887.450
	CRR073309	Second white 1	957.850
	CRR073310	Second white 2	568.757
	CRR073311	Second white 3	901.715
	CRR073312	Silver flowering 1	1140.173
	CRR073313	Silver flowering 2	1173.633
	CRR073314	Silver flowering 3	1173.935
	CRR073315	Gold flowering 1	179.488
	CRR073316	Gold flowering 2	199.726
	CRR073317	Gold flowering 3	233.107
	CRR073318	Tawny withering 1	1174.944
	CRR073319	Tawny withering 2	1370.313
	CRR073320	Tawny withering 3	1043.993