Detail information of GWHGAAZE012346


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268377.10PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic [Vitis vinifera]
Swissprottr|Q84R11|CRSH_ARATH0Probable GTP diphosphokinase CRSH, chloroplastic (Precursor)
trEMBLtr|D7T693|D7T693_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26014.3}
TAIR10AT3G17470.10Ca2+-activated RelA/spot homolog

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8406248284067292+
GWHAAZE00000003mRNA8406248284067292+
GWHAAZE00000003exon8406248284062883+
GWHAAZE00000003exon8406465284065584+
GWHAAZE00000003exon8406644184066576+
GWHAAZE00000003exon8406666384066718+
GWHAAZE00000003exon8406717384067292+
GWHAAZE00000003CDS8406248284062883+
GWHAAZE00000003CDS8406465284065584+
GWHAAZE00000003CDS8406644184066576+
GWHAAZE00000003CDS8406666384066718+
GWHAAZE00000003CDS8406717384067292+
Transcript Sequence

Network for GWHGAAZE012346

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13328.7HD_41142501.50E-18
PF04607.18RelA_SpoT3164381.10E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00951relA Metabolic pathways map01100
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0015969biological_processguanosine tetraphosphate metabolic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.719
SRR3591706second leaf26.154
SRR3591707mature leaf51.136
SRR3591708Shoot apex30.000
SRR3591709Stem46.757
SRR3591710White floral bud24.441
SRR3591711White flower47.231
SRR3591712Green floral bud17.739
SRR3591713Yellow flower43.978
SRP173429 SRR8316895Juvenile bud stage 12.471
SRR8316896Juvenile bud stage 17.334
SRR8316897Juvenile bud stage 7.719
SRR8316894Third green stage 9.122
SRR8316900Third green stage 28.377
SRR8316901Third green stage 27.165
SRR8316898Complete white stage 20.756
SRR8316899Complete white stage 48.444
SRR8316903Complete white stage 38.264
SRR8316902Silver flowering stage30.125
SRR8316904Silver flowering stage49.873
SRR8316905Silver flowering stage26.467
SRR8316906Gold flowering stage 77.855
SRR8316907Gold flowering stage 56.090
SRR8316908Gold flowering stage 68.147
SRP132670SRR6706286Control26.377
SRR6706287Light intensity 50%24.471
SRR6706288Light intensity 20%26.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.849
CNS0095593Slightly white alabastrum(diploid) 212.855
CNS0095594Slightly white alabastrum(diploid) 310.013
CNS0095595Whole white alabastrum(diploid) 212.285
CNS0095596Whole white alabastrum(diploid) 310.924
CNS0095597Whole white alabastrum(diploid) 415.097
CNS0095598Silvery flower (diploied) 127.229
CNS0095599Silvery flower (diploied) 229.803
CNS0095600Silvery flower (diploied) 3107.008
CNS0095601Golden flower (diploid) 145.281
CNS0095602Golden flower (diploid) 293.591
CNS0095603Golden flower (diploid) 394.180
CNS0095604Slightly white alabastrum(tetraploid) 123.526
CNS0095605Slightly white alabastrum(tetraploid) 215.724
CNS0095606Slightly white alabastrum(tetraploid) 347.279
CNS0095607Whole white alabastrum(tetraploid) 114.109
CNS0095608Whole white alabastrum(tetraploid) 212.644
CNS0095609Whole white alabastrum(tetraploid) 330.320
CNS0095610Silvery flower (tetraploid) 195.245
CNS0095611Silvery flower (tetraploid) 2103.081
CNS0095612Silvery flower (tetraploid) 323.728
CNS0095613Golden flower (tetraploid) 159.790
CNS0095614Golden flower (tetraploid) 294.668
CNS0095615Golden flower (tetraploid) 3104.296
CRA001975CRR073297Stem 112.001
CRR073298Stem 214.723
CRR073299Stem 312.933
CRR073300Leaf 117.929
CRR073301Leaf 215.197
CRR073302Leaf 312.809
CRR073303Juvenile bud 118.448
CRR073304Juvenile bud 218.156
CRR073305Juvenile bud 320.506
CRR073306Third green 111.460
CRR073307Third green 26.835
CRR073308Third green 310.785
CRR073309Second white 15.637
CRR073310Second white 28.635
CRR073311Second white 36.867
CRR073312Silver flowering 13.664
CRR073313Silver flowering 23.535
CRR073314Silver flowering 32.520
CRR073315Gold flowering 117.897
CRR073316Gold flowering 228.354
CRR073317Gold flowering 315.775
CRR073318Tawny withering 16.072
CRR073319Tawny withering 24.793
CRR073320Tawny withering 37.774