Gene detail

Detail information of GWHGAAZE012350

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009600188.1	PREDICTED: proline--tRNA ligase-like isoform X2 [Nicotiana tomentosiformis]
trEMBL	tr\|I1NBI4\|I1NBI4_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40930.3}
TAIR10	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84147411	84159000	+
GWHAAZE00000003	mRNA	84147411	84159000	+
GWHAAZE00000003	exon	84147411	84147440	+
GWHAAZE00000003	exon	84147560	84147653	+
GWHAAZE00000003	exon	84147739	84147824	+
GWHAAZE00000003	exon	84151666	84151797	+
GWHAAZE00000003	exon	84152833	84152925	+
GWHAAZE00000003	exon	84153448	84153564	+
GWHAAZE00000003	exon	84154022	84154209	+
GWHAAZE00000003	exon	84155300	84155396	+
GWHAAZE00000003	exon	84155823	84155945	+
GWHAAZE00000003	exon	84156468	84156620	+
GWHAAZE00000003	exon	84157250	84157534	+
GWHAAZE00000003	exon	84158077	84158295	+
GWHAAZE00000003	exon	84158720	84158813	+
GWHAAZE00000003	exon	84158906	84159000	+
GWHAAZE00000003	CDS	84147411	84147440	+
GWHAAZE00000003	CDS	84147560	84147653	+
GWHAAZE00000003	CDS	84147739	84147824	+
GWHAAZE00000003	CDS	84151666	84151797	+
GWHAAZE00000003	CDS	84152833	84152925	+
GWHAAZE00000003	CDS	84153448	84153564	+
GWHAAZE00000003	CDS	84154022	84154209	+
GWHAAZE00000003	CDS	84155300	84155396	+
GWHAAZE00000003	CDS	84155823	84155945	+
GWHAAZE00000003	CDS	84156468	84156620	+
GWHAAZE00000003	CDS	84157250	84157534	+
GWHAAZE00000003	CDS	84158077	84158295	+
GWHAAZE00000003	CDS	84158720	84158813	+
GWHAAZE00000003	CDS	84158906	84158970	+
GWHAAZE00000003	three_prime_UTR	84158971	84159000	+

Transcript Sequence
>GWHTAAZE012364 ATGATCTTAGCCCCTTCGTGTGATGAAGAGGAAGTAGAGAAGGATGTGAAAACACGTACAGAGGCCGAGTTGGGGGCAGCGAAGTTGCTTTGCTCTCCCTTTGACCAGCCAGAACTCCCTGCAGGTACTTTATGTTTTGCCTCTGGTAAGCCAGCAAGGAGATGGACCTATTGGGCAGGAGTTACTAGGAATCAAATGGTTTTTAACTATTCTTGGTGGCCTCCTTCACTCGAATATGGAATATTGAATGTTTCAGGGGGTAAAATGAAGGAGGTCAAAAAAGAGACTCGGCTTGGTCTTTCCTTCAAGAAGGATGGGAATTTTGGAGAGTGGTACTCTGAGGTGGTGGTTAGTGGAGAAATGATCGAGTATTATGACATATCTGGTTGTTATATTTTAAGGCCGTGGACGATGTCAATATGGGAAACCGTGCAATCATTTTTTGACAAAGAAATAAAGAAGATGAAGATAAAGAATTGCTATTTCCCTCTTTTTGTATCTCCTGGTGTACTGCAAAGGGAAAAGGATCACATTGAGGGGTTTGCTCCAGAGGTTGCATGGGTTACAAAATCTGGAGAATCTGAATTAGAGGTGCCTATTGCAATCCGTCCCACTAGTGAGACTGTTATGTATCCTTATTATTCTAAGTGGATAAGAGGACATCGTGACTTACCTTTAAAGCTAAACCAGTGGTGCAATGTTGTTCGATGGGAGTTCAGCCATCCTACCCCATTCATTAGAGATATACGTTTTTCTTTTGCTGAGTATAGGAGTCGAGAGTTCCTTTGGCAAGAAGGACATACAGCATTTGCAACCAAGGAAGAGGCAGATGCAGAGGTCCTTGAGATATTGGAACTATATAGACAAATTTATGAAGAATATTTGGCAGTACCAGTGGTGAAGGGTAAAAAGAGCAAGCTGGAGAAGTTTGCTGGCGGTCTTTACACAACAAGTGTTGAGGCTTTTATCCCAAACACTGGTCGAGGTATACAAGGTGCTACATCACATTGTTTGGGTCAAAATTTTGCGAAAATGTTTGAGATAAACTTTGAGAATGAGAAGGGGGAGAAGAGTATGGTTTGGCAGAATTCGTGGGGTTACAGTACTCGAACGCTGGGAGTCATGGTGATGGTTCATGGGGATGACAAAGGATTAGTGCTTCCACCTAAAGTAGCATCAGTCCAAGTCATTGTGATCCCAGTGCCTTACAAAGATGCTGATACAGAAGCAATTTTAGGTGCATGCTCTAAAGCTGTGAATGCCTTGACTGAAGCTGGTTTACGTGTTGAGACAGATCTTAGAGAGAACTACTCCCCTGGTTGGAAATACTCCCATTGGGAATTGAAAGGTGTTCCATTGAGAATTGAAATTGGGCCAAAAGATTTGGCCAATAATCAGGTACGAGCTGTTCGCCGTGACAATTCCGCAAAGGTGGATATTCCTGTCGTAAAGTTGGTTGAGCAAGTAAGTGGCATGTTGGACGATATCCAACAAAGTTTATTCAATTCTGCGAAGCAAAAAAGAGATGCTTGTATTAAGGTTGTAAACACATGGGATGAGTTTATGGAAGCACTGGGCCAAAAGAAAATGATCTTAGCCCCTTGGTGTGATGAAGAGGAAGTAGAAAAGGACGTGAAAGCACGTACAAATGGCGTGATAGGGGCAGCTAAGTCACTTTGCTCTCCTTTTGACCAGCCAGAACTCCCTGCAGGGACTGTGTGTTTTGCCTCTGGTAGGCCAGCAAGGAAATGGACCTACTGGGGCAGGAGTTACTAGGAACCAAATGTTTTTTACCTTTTGTCACTG

Network for GWHGAAZE012350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09180.12	ProRS-C_1	1	59	3.30E-13
PF00587.26	tRNA-synt_2b	200	376	1.60E-13
PF03129.21	HGTP_anticodon	395	489	3.20E-19
PF09180.12	ProRS-C_1	518	591	3.00E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01881	PARS, proS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006433	biological_process	prolyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0004827	molecular_function	proline-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.161
	SRR3591706	second leaf	2.137
	SRR3591707	mature leaf	9.317
	SRR3591708	Shoot apex	1.823
	SRR3591709	Stem	13.128
	SRR3591710	White floral bud	4.796
	SRR3591711	White flower	7.158
	SRR3591712	Green floral bud	4.175
	SRR3591713	Yellow flower	2.060
SRP173429	SRR8316895	Juvenile bud stage	2.777
	SRR8316896	Juvenile bud stage	3.987
	SRR8316897	Juvenile bud stage	4.962
	SRR8316894	Third green stage	1.542
	SRR8316900	Third green stage	2.583
	SRR8316901	Third green stage	2.669
	SRR8316898	Complete white stage	1.328
	SRR8316899	Complete white stage	6.015
	SRR8316903	Complete white stage	1.962
	SRR8316902	Silver flowering stage	1.860
	SRR8316904	Silver flowering stage	1.768
	SRR8316905	Silver flowering stage	0.428
	SRR8316906	Gold flowering stage	2.668
	SRR8316907	Gold flowering stage	3.044
	SRR8316908	Gold flowering stage	5.227
SRP132670	SRR6706286	Control	1.585
	SRR6706287	Light intensity 50%	1.376
	SRR6706288	Light intensity 20%	1.286
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.896
	CNS0095593	Slightly white alabastrum(diploid) 2	7.829
	CNS0095594	Slightly white alabastrum(diploid) 3	8.854
	CNS0095595	Whole white alabastrum(diploid) 2	6.045
	CNS0095596	Whole white alabastrum(diploid) 3	3.154
	CNS0095597	Whole white alabastrum(diploid) 4	5.539
	CNS0095598	Silvery flower (diploied) 1	7.038
	CNS0095599	Silvery flower (diploied) 2	6.809
	CNS0095600	Silvery flower (diploied) 3	3.211
	CNS0095601	Golden flower (diploid) 1	5.045
	CNS0095602	Golden flower (diploid) 2	3.271
	CNS0095603	Golden flower (diploid) 3	3.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.826
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.692
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.938
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.732
	CNS0095610	Silvery flower (tetraploid) 1	3.760
	CNS0095611	Silvery flower (tetraploid) 2	2.648
	CNS0095612	Silvery flower (tetraploid) 3	2.095
	CNS0095613	Golden flower (tetraploid) 1	5.622
	CNS0095614	Golden flower (tetraploid) 2	2.917
	CNS0095615	Golden flower (tetraploid) 3	1.937
CRA001975	CRR073297	Stem 1	1.811
	CRR073298	Stem 2	1.645
	CRR073299	Stem 3	1.162
	CRR073300	Leaf 1	1.825
	CRR073301	Leaf 2	2.088
	CRR073302	Leaf 3	1.627
	CRR073303	Juvenile bud 1	2.555
	CRR073304	Juvenile bud 2	0.197
	CRR073305	Juvenile bud 3	2.903
	CRR073306	Third green 1	0.046
	CRR073307	Third green 2	0.444
	CRR073308	Third green 3	0.259
	CRR073309	Second white 1	0.531
	CRR073310	Second white 2	0.094
	CRR073311	Second white 3	0.063
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.483
	CRR073316	Gold flowering 2	2.060
	CRR073317	Gold flowering 3	1.713
	CRR073318	Tawny withering 1	9.794
	CRR073319	Tawny withering 2	22.402
	CRR073320	Tawny withering 3	13.259