Detail information of GWHGAAZE012351


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002519341.10Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis]
Swissprottr|Q9S775|PKL_ARATH1E-36CHD3-type chromatin-remodeling factor PICKLE
trEMBLtr|B9S022|B9S022_RICCO0Chromatin remodelling complex ATPase chain isw-1, putative {ECO:0000313|EMBL:EEF43205.1}
TAIR10AT1G48310.10chromatin remodeling factor18

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8417085584191873-
GWHAAZE00000003mRNA8417085584191873-
GWHAAZE00000003exon8417085584171140-
GWHAAZE00000003exon8417139484171430-
GWHAAZE00000003exon8417156384171621-
GWHAAZE00000003exon8417476284174887-
GWHAAZE00000003exon8417504184175145-
GWHAAZE00000003exon8417521984175287-
GWHAAZE00000003exon8417607284176137-
GWHAAZE00000003exon8417720484177293-
GWHAAZE00000003exon8417767384177729-
GWHAAZE00000003exon8417805784178185-
GWHAAZE00000003exon8417830584178370-
GWHAAZE00000003exon8417847284178540-
GWHAAZE00000003exon8417890484178981-
GWHAAZE00000003exon8417914884179303-
GWHAAZE00000003exon8417957184179612-
GWHAAZE00000003exon8417969284179775-
GWHAAZE00000003exon8418212284182188-
GWHAAZE00000003exon8418233684182402-
GWHAAZE00000003exon8419096684191032-
GWHAAZE00000003exon8419159984191690-
GWHAAZE00000003exon8419178084191873-
GWHAAZE00000003CDS8419178084191873-
GWHAAZE00000003CDS8419159984191690-
GWHAAZE00000003CDS8419096684191032-
GWHAAZE00000003CDS8418233684182402-
GWHAAZE00000003CDS8418212284182188-
GWHAAZE00000003CDS8417969284179775-
GWHAAZE00000003CDS8417957184179612-
GWHAAZE00000003CDS8417914884179303-
GWHAAZE00000003CDS8417890484178981-
GWHAAZE00000003CDS8417847284178540-
GWHAAZE00000003CDS8417830584178370-
GWHAAZE00000003CDS8417805784178185-
GWHAAZE00000003CDS8417767384177729-
GWHAAZE00000003CDS8417720484177293-
GWHAAZE00000003CDS8417607284176137-
GWHAAZE00000003CDS8417521984175287-
GWHAAZE00000003CDS8417504184175145-
GWHAAZE00000003CDS8417476284174887-
GWHAAZE00000003CDS8417156384171621-
GWHAAZE00000003CDS8417139484171430-
GWHAAZE00000003CDS8417098884171140-
GWHAAZE00000003three_prime_UTR8417085584170987-
Transcript Sequence

Network for GWHGAAZE012351

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N1173662.80E-28
PF00271.32Helicase_C4025072.30E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.809
SRR3591706second leaf9.385
SRR3591707mature leaf8.749
SRR3591708Shoot apex18.360
SRR3591709Stem13.424
SRR3591710White floral bud16.057
SRR3591711White flower19.474
SRR3591712Green floral bud14.896
SRR3591713Yellow flower17.387
SRP173429 SRR8316895Juvenile bud stage 7.932
SRR8316896Juvenile bud stage 12.461
SRR8316897Juvenile bud stage 5.848
SRR8316894Third green stage 4.492
SRR8316900Third green stage 12.960
SRR8316901Third green stage 11.953
SRR8316898Complete white stage 4.904
SRR8316899Complete white stage 12.207
SRR8316903Complete white stage 7.529
SRR8316902Silver flowering stage11.122
SRR8316904Silver flowering stage13.748
SRR8316905Silver flowering stage8.024
SRR8316906Gold flowering stage 20.995
SRR8316907Gold flowering stage 20.815
SRR8316908Gold flowering stage 17.746
SRP132670SRR6706286Control6.210
SRR6706287Light intensity 50%7.095
SRR6706288Light intensity 20%7.247
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.673
CNS0095593Slightly white alabastrum(diploid) 29.654
CNS0095594Slightly white alabastrum(diploid) 39.764
CNS0095595Whole white alabastrum(diploid) 210.871
CNS0095596Whole white alabastrum(diploid) 310.961
CNS0095597Whole white alabastrum(diploid) 412.671
CNS0095598Silvery flower (diploied) 114.375
CNS0095599Silvery flower (diploied) 213.151
CNS0095600Silvery flower (diploied) 313.976
CNS0095601Golden flower (diploid) 19.771
CNS0095602Golden flower (diploid) 212.800
CNS0095603Golden flower (diploid) 311.660
CNS0095604Slightly white alabastrum(tetraploid) 114.422
CNS0095605Slightly white alabastrum(tetraploid) 211.359
CNS0095606Slightly white alabastrum(tetraploid) 312.652
CNS0095607Whole white alabastrum(tetraploid) 113.552
CNS0095608Whole white alabastrum(tetraploid) 212.030
CNS0095609Whole white alabastrum(tetraploid) 311.228
CNS0095610Silvery flower (tetraploid) 114.658
CNS0095611Silvery flower (tetraploid) 215.271
CNS0095612Silvery flower (tetraploid) 323.145
CNS0095613Golden flower (tetraploid) 18.073
CNS0095614Golden flower (tetraploid) 27.921
CNS0095615Golden flower (tetraploid) 316.224
CRA001975CRR073297Stem 112.212
CRR073298Stem 29.014
CRR073299Stem 37.244
CRR073300Leaf 19.385
CRR073301Leaf 27.496
CRR073302Leaf 35.294
CRR073303Juvenile bud 15.235
CRR073304Juvenile bud 23.779
CRR073305Juvenile bud 35.822
CRR073306Third green 110.099
CRR073307Third green 210.083
CRR073308Third green 39.324
CRR073309Second white 16.851
CRR073310Second white 29.080
CRR073311Second white 38.653
CRR073312Silver flowering 15.985
CRR073313Silver flowering 24.769
CRR073314Silver flowering 32.976
CRR073315Gold flowering 13.146
CRR073316Gold flowering 26.612
CRR073317Gold flowering 32.649
CRR073318Tawny withering 16.214
CRR073319Tawny withering 25.696
CRR073320Tawny withering 35.715