Gene detail

Detail information of GWHGAAZE012355

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010246811.1	PREDICTED: cation/H(+) antiporter 19 [Nelumbo nucifera]
Swissprot	tr\|Q9LUN4\|CHX19_ARATH	Cation/H(+) antiporter 19
trEMBL	tr\|A0A061EW78\|A0A061EW78_THECC	Cation/H+ exchanger 19 {ECO:0000313\|EMBL:EOY09340.1}
TAIR10	AT3G17630.1	cation/H+ exchanger 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84254656	84260037	-
GWHAAZE00000003	mRNA	84254656	84260037	-
GWHAAZE00000003	exon	84259840	84260037	-
GWHAAZE00000003	exon	84257328	84257781	-
GWHAAZE00000003	exon	84256350	84256897	-
GWHAAZE00000003	exon	84255615	84256262	-
GWHAAZE00000003	exon	84254656	84255437	-
GWHAAZE00000003	CDS	84259840	84260037	-
GWHAAZE00000003	CDS	84257328	84257781	-
GWHAAZE00000003	CDS	84256350	84256897	-
GWHAAZE00000003	CDS	84255615	84256262	-
GWHAAZE00000003	CDS	84254817	84255437	-
GWHAAZE00000003	three_prime_UTR	84254656	84254816	-

Transcript Sequence
>GWHTAAZE012369 ATGGCTACGAATAACATGACGGTGATATGCCCAAAGCCGATGAAGGCGACATCAAATGGCGCATTTCAAGGGGAAAGCCCGCTTGATTACGCGCTTCCACTGGCTATTTTACAGATATGTTTGGTGGTTGCATTTACCAGAGTTCTTGCTTTCTGTTTAAAACCGCTCAGACAACCTAGAGTCATTGCAGAGATCATTGGAGGAATACTACTGGGACCTTCAGCCCTAGGTAGAAGCGATAAATTCCTTCACACAGTCTTCCCGGCAAAAAGCATGACCGTCCTCGACACCCTCGCCAACATCGGCCTCCTCTACTTCCTCTTCCTTGTAGGCCTAGAGCTCGACATGAACTCCATTCGCCGGACCGGCACCAAGGCCCTTGGAATCGCTGTTGCCGGAATCACCTTCCCCTTCATCCTTGGGATTGGCACCTCCTTCATCCTCCGTTCCACAATCTCCAAGGGCGTCCCCGGGGCCCCCTTCCTTGTCTTCATGGGCGTATCCCTCTCCGTCACTGCCTTCCCGGTCCTCGCTCGCATCCTCGCTGAACTCAAGCTCCTCACCACTGACGTTGGCCGTATGGCCATGTCTGCAGCCGCCGTAAACGATGTTGCCGCTTGGATCCTCCTTGCCCTAGCTATCGCCCTCTCAGGTACCGATACCTCGCCTCTCATCTCCGTTTGGGTCCTGATCTGCGGCCTTGGGTTCATACTTGCTGCATTCGTACTCCTAAAGCCCTTACTAGAGCTAATGGCTCGCAGATCGCCCGATGGTGAGCCGGTCAAGGAGCTTTACATATGCATCACATTAACTCTCGTTCTAGCCGCGGGCTTCGCCACGGATGCAATTGGAATACATGCGCTATTTGGGGCGTTTGTGGTGGGGTTAACTGTGCCCAAAGATGGTCCGTTTGCAGGGGTGCTGATAGAGAAGCTTGAAGATCTGGTGTCGGGGTTGTTATTGCCTCTGTATTTTGTGTCCAGTGGGCTTAAAACGAACGTTGCGACTATAAGGGGAGGGCAATCGTGGGGATTATTATGGCTTGTTATCTTCAATGCTTGTTTTGGGAAGATTGTTGGGACTGTGGCTGTTACAATGCTTTTCAAGGTCAAATATAGAGAGGCATTAGCACTTGGATTTCTAATGAACACCAAAGGTTTGGTTGAGCTCATTGTTCTCAACATTGGCAAGGATCGAAAGGTGTTGAATGACCAGACTTTCGCAATCTTAGTTCTCATGGCTTTGTTCACCACATTTATCACCACGCCAATTGTGATGGCGGTGTACAAGCCGGCCAGAAGAGTAGCACCGTACAAGCACCGCATGGTCAAGCGCAAAAACCCAGACACAGAGCTCCGGCTACTCGCATGCTTCCACAGCACCCGAAACATCCCCACACTTATCAACCTCATCGAGTCTTCTCGAGGAACTCGCCGCAAAGGCCGCCTATGCGTCTACTCAATGCATCTCATGGAGCTCTCGGAGCGATCATCGGCTATCTCTATGGTCCACAAAGCCCGTAACAATGGCCTTCCGTTTTGGAACAACAAGAAGGGCAGCGAAGATCGGATGGTGATCGCCTTTGAGGCCTACCACCAACTCACAAGCGTTACTGTCCGTCCGATGACCGCCATCTCTGATCTCCATAGCATCCATGAGGACATATGCATGAGTGCACGCCAGAAACGTGCGGCCATTATCATCCTCCCGTTCCACAAGCATCAGAGGTTCGATGGTGATATGGAGTCGTTAGGGCACTCGTTTCACATGGTGAACAAGCGTGTCCTCAGGCACGCACCGTGTTCGGTCGGGATCCTTATCGACCGAGGTCTCGGAGGGACCACTCAAGTAATGGCTAGCGAACTTTCCTTCAAAGTCGTGGTGCCGTTCTTTGGCGGCCGAGATGATCTTGAGGCGCTCGCGTACGGGATGAGGATGATGGAGCACCCGGGGATCACTCTCACTTTAGTGAAGTTTGTCGGACCTCCGTGGAAGCTAGTTAGCAGTGGTAGCAGCGGTGATGGTGGTGATAGTGGCACCAAAACCCCGAAAAGTCCCCAAAGCCCCAAGGGCACCGACGATAATAGCAATGAAGACGAAGCATTTTTCACAGAGTGCGTATCGAAGATCAAGAATCAAGCCGATGCTTCGTATGAGGAGAGAGAAGTGGGGAATAAGGCAGATATCAATGAGGCATTGAAAACGATAAGCAAATCATGCAGCTTGTTCTTGGTTGGGAGAATGCCGGCGTGTGTACCGCAGTTGGTGGAGGCAAGTGATTGTGCTGAGTTAGGACCGGTGGGGAGCTTGATGGCATCATCGGATTTCTCGTCGACGGTGTCAGTGCTAGTGGTTCAGCAATATGATCCCTCCACTGCAACTCTTAACCCTGATATCATTGAGGATCAAGGCGGGGCAGATTTACAACCGGATACACCGGTCGCTGGAGCCGTACCTGAAGATGTTTGATCAAGAAATCGCACACTAGCTAGGTAGCTTATTTATTTTAAAAGGTAGATTTTTTCTTTTAGGCAAAAGTTAGATGTTAATTAGACTGAATTTAGAAAAAAATTAACATGTTACAATAATCCAAATTTAATCTTCTATGACTATATTTTTGTTATTACAAA

Network for GWHGAAZE012355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00999.22	Na_H_Exchanger	41	424	9.00E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006812	biological_process	cation transport
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0015299	molecular_function	solute:proton antiporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.219
	SRR3591706	second leaf	0.358
	SRR3591707	mature leaf	0.524
	SRR3591708	Shoot apex	0.941
	SRR3591709	Stem	6.781
	SRR3591710	White floral bud	7.029
	SRR3591711	White flower	3.293
	SRR3591712	Green floral bud	42.192
	SRR3591713	Yellow flower	1.425
SRP173429	SRR8316895	Juvenile bud stage	2.575
	SRR8316896	Juvenile bud stage	8.828
	SRR8316897	Juvenile bud stage	4.704
	SRR8316894	Third green stage	6.252
	SRR8316900	Third green stage	38.190
	SRR8316901	Third green stage	43.165
	SRR8316898	Complete white stage	0.164
	SRR8316899	Complete white stage	5.866
	SRR8316903	Complete white stage	2.363
	SRR8316902	Silver flowering stage	0.254
	SRR8316904	Silver flowering stage	0.107
	SRR8316905	Silver flowering stage	0.136
	SRR8316906	Gold flowering stage	0.117
	SRR8316907	Gold flowering stage	0.532
	SRR8316908	Gold flowering stage	0.277
SRP132670	SRR6706286	Control	25.716
	SRR6706287	Light intensity 50%	22.890
	SRR6706288	Light intensity 20%	20.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.340
	CNS0095593	Slightly white alabastrum(diploid) 2	20.163
	CNS0095594	Slightly white alabastrum(diploid) 3	18.327
	CNS0095595	Whole white alabastrum(diploid) 2	41.609
	CNS0095596	Whole white alabastrum(diploid) 3	49.675
	CNS0095597	Whole white alabastrum(diploid) 4	42.669
	CNS0095598	Silvery flower (diploied) 1	6.995
	CNS0095599	Silvery flower (diploied) 2	4.359
	CNS0095600	Silvery flower (diploied) 3	4.713
	CNS0095601	Golden flower (diploid) 1	5.672
	CNS0095602	Golden flower (diploid) 2	8.694
	CNS0095603	Golden flower (diploid) 3	7.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.303
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.532
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.799
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	112.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.618
	CNS0095610	Silvery flower (tetraploid) 1	1.123
	CNS0095611	Silvery flower (tetraploid) 2	1.948
	CNS0095612	Silvery flower (tetraploid) 3	1.404
	CNS0095613	Golden flower (tetraploid) 1	1.699
	CNS0095614	Golden flower (tetraploid) 2	1.919
	CNS0095615	Golden flower (tetraploid) 3	0.740
CRA001975	CRR073297	Stem 1	4.060
	CRR073298	Stem 2	6.695
	CRR073299	Stem 3	3.333
	CRR073300	Leaf 1	29.245
	CRR073301	Leaf 2	31.318
	CRR073302	Leaf 3	14.033
	CRR073303	Juvenile bud 1	18.190
	CRR073304	Juvenile bud 2	11.549
	CRR073305	Juvenile bud 3	2.128
	CRR073306	Third green 1	0.373
	CRR073307	Third green 2	0.251
	CRR073308	Third green 3	0.554
	CRR073309	Second white 1	0.078
	CRR073310	Second white 2	0.176
	CRR073311	Second white 3	0.159
	CRR073312	Silver flowering 1	0.391
	CRR073313	Silver flowering 2	0.319
	CRR073314	Silver flowering 3	0.377
	CRR073315	Gold flowering 1	0.872
	CRR073316	Gold flowering 2	2.269
	CRR073317	Gold flowering 3	1.245
	CRR073318	Tawny withering 1	14.898
	CRR073319	Tawny withering 2	11.962
	CRR073320	Tawny withering 3	16.541