Detail information of GWHGAAZE012356


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008222310.19.2416E-80PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]
Swissprottr|Q9SX68|RK18_ARATH7E-7350S ribosomal protein L18, chloroplastic (Precursor)
trEMBLtr|M5XM31|M5XM31_PRUPE2E-79Uncharacterized protein {ECO:0000313|EMBL:EMJ27162.1}
TAIR10AT1G48350.11E-52Ribosomal L18p/L5e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8426178984264773-
GWHAAZE00000003mRNA8426178984264773-
GWHAAZE00000003exon8426459184264773-
GWHAAZE00000003exon8426310784263154-
GWHAAZE00000003exon8426272184262882-
GWHAAZE00000003exon8426178984262098-
GWHAAZE00000003CDS8426459184264773-
GWHAAZE00000003CDS8426310784263154-
GWHAAZE00000003CDS8426272184262882-
GWHAAZE00000003CDS8426194984262098-
GWHAAZE00000003three_prime_UTR8426178984261948-
Transcript Sequence

Network for GWHGAAZE012356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00861.23Ribosomal_L18p771802.00E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02881RP-L18, MRPL18, rplR Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf76.979
SRR3591706second leaf219.320
SRR3591707mature leaf100.213
SRR3591708Shoot apex212.363
SRR3591709Stem26.417
SRR3591710White floral bud23.975
SRR3591711White flower29.255
SRR3591712Green floral bud60.839
SRR3591713Yellow flower27.922
SRP173429 SRR8316895Juvenile bud stage 69.607
SRR8316896Juvenile bud stage 75.414
SRR8316897Juvenile bud stage 48.524
SRR8316894Third green stage 35.643
SRR8316900Third green stage 121.706
SRR8316901Third green stage 93.856
SRR8316898Complete white stage 22.824
SRR8316899Complete white stage 66.057
SRR8316903Complete white stage 26.231
SRR8316902Silver flowering stage15.711
SRR8316904Silver flowering stage14.056
SRR8316905Silver flowering stage9.601
SRR8316906Gold flowering stage 29.265
SRR8316907Gold flowering stage 45.867
SRR8316908Gold flowering stage 40.007
SRP132670SRR6706286Control99.480
SRR6706287Light intensity 50%88.717
SRR6706288Light intensity 20%103.940
CNP0000432CNS0095592Slightly white alabastrum(diploid) 199.348
CNS0095593Slightly white alabastrum(diploid) 275.897
CNS0095594Slightly white alabastrum(diploid) 372.760
CNS0095595Whole white alabastrum(diploid) 282.460
CNS0095596Whole white alabastrum(diploid) 398.863
CNS0095597Whole white alabastrum(diploid) 475.168
CNS0095598Silvery flower (diploied) 172.129
CNS0095599Silvery flower (diploied) 283.612
CNS0095600Silvery flower (diploied) 358.012
CNS0095601Golden flower (diploid) 171.510
CNS0095602Golden flower (diploid) 256.014
CNS0095603Golden flower (diploid) 363.474
CNS0095604Slightly white alabastrum(tetraploid) 171.076
CNS0095605Slightly white alabastrum(tetraploid) 280.520
CNS0095606Slightly white alabastrum(tetraploid) 397.842
CNS0095607Whole white alabastrum(tetraploid) 135.919
CNS0095608Whole white alabastrum(tetraploid) 263.185
CNS0095609Whole white alabastrum(tetraploid) 395.337
CNS0095610Silvery flower (tetraploid) 152.953
CNS0095611Silvery flower (tetraploid) 262.120
CNS0095612Silvery flower (tetraploid) 359.695
CNS0095613Golden flower (tetraploid) 150.655
CNS0095614Golden flower (tetraploid) 255.826
CNS0095615Golden flower (tetraploid) 340.277
CRA001975CRR073297Stem 1118.110
CRR073298Stem 2110.373
CRR073299Stem 3134.932
CRR073300Leaf 177.259
CRR073301Leaf 292.972
CRR073302Leaf 3113.189
CRR073303Juvenile bud 193.538
CRR073304Juvenile bud 2104.964
CRR073305Juvenile bud 360.582
CRR073306Third green 140.241
CRR073307Third green 229.654
CRR073308Third green 326.205
CRR073309Second white 146.836
CRR073310Second white 233.850
CRR073311Second white 318.957
CRR073312Silver flowering 127.004
CRR073313Silver flowering 237.208
CRR073314Silver flowering 324.630
CRR073315Gold flowering 1242.210
CRR073316Gold flowering 2249.052
CRR073317Gold flowering 3209.711
CRR073318Tawny withering 136.079
CRR073319Tawny withering 253.655
CRR073320Tawny withering 341.680