Gene detail

Detail information of GWHGAAZE012359

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010655954.1	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|F6HVX7\|F6HVX7_VITVI	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256\|HAMAP-Rule:MF_03022}
TAIR10	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84324716	84334229	+
GWHAAZE00000003	mRNA	84324716	84334229	+
GWHAAZE00000003	exon	84324716	84324728	+
GWHAAZE00000003	exon	84325703	84325833	+
GWHAAZE00000003	exon	84327236	84327353	+
GWHAAZE00000003	exon	84327457	84327683	+
GWHAAZE00000003	exon	84327898	84328000	+
GWHAAZE00000003	exon	84328797	84328867	+
GWHAAZE00000003	exon	84329001	84329075	+
GWHAAZE00000003	exon	84329170	84329313	+
GWHAAZE00000003	exon	84329400	84329631	+
GWHAAZE00000003	exon	84330035	84330502	+
GWHAAZE00000003	exon	84330973	84331032	+
GWHAAZE00000003	exon	84331108	84331223	+
GWHAAZE00000003	exon	84332098	84332223	+
GWHAAZE00000003	exon	84333197	84333271	+
GWHAAZE00000003	exon	84333461	84333573	+
GWHAAZE00000003	exon	84333759	84333875	+
GWHAAZE00000003	exon	84333968	84334036	+
GWHAAZE00000003	exon	84334166	84334229	+
GWHAAZE00000003	CDS	84324716	84324728	+
GWHAAZE00000003	CDS	84325703	84325833	+
GWHAAZE00000003	CDS	84327236	84327353	+
GWHAAZE00000003	CDS	84327457	84327683	+
GWHAAZE00000003	CDS	84327898	84328000	+
GWHAAZE00000003	CDS	84328797	84328867	+
GWHAAZE00000003	CDS	84329001	84329075	+
GWHAAZE00000003	CDS	84329170	84329313	+
GWHAAZE00000003	CDS	84329400	84329631	+
GWHAAZE00000003	CDS	84330035	84330502	+
GWHAAZE00000003	CDS	84330973	84331032	+
GWHAAZE00000003	CDS	84331108	84331223	+
GWHAAZE00000003	CDS	84332098	84332223	+
GWHAAZE00000003	CDS	84333197	84333271	+
GWHAAZE00000003	CDS	84333461	84333573	+
GWHAAZE00000003	CDS	84333759	84333875	+
GWHAAZE00000003	CDS	84333968	84334036	+
GWHAAZE00000003	CDS	84334166	84334229	+

Transcript Sequence
>GWHTAAZE012373 ATGGAAGATGATGAGGAGTTTGTAGCTCATGCTTCGAATGTCAATTGCCTCAAGATTGGGAGGAAGTCGTCAAGGGTTCTTGTCACTGGAGGAGAAGATCACAAGGTTAATTTGTGGGCCATTGGCAAGCCAAATTCCATACTGAGTTTGTCTGGTCATTCAAGTGGAATTGATTCAGTTAGCTTTGATTCTTCAGAAGTGTTGATTGCTGCTGGAGCAGCAAGTGGTACAATCAAGATTTGGGATTTAGAGGAGGCAAAGATTGTTCGCACCCTCACTGGTCATCGATCTAATGCCATATCCTTGGACTTCCATCCGTTTGGAGAGTTCTTTGCATCTGGATCTTTGGACACAAATCTAAAGATATGGGATATTAGACGCAAAGGCTGTATCCACACATACAAGGGTCACACTCGTGGGGTCAATGCGATTAGGTTTACACCAGATGGCCGTTGGGTTGTATCTGGGGGACAGGACAACACTGTGAAGCTGTGGGATCTAACTGCGGGGAAGCTGTTGCATGATTTCAAATGCCATGAAGGCCAGATTCAATGCATAGATTTTCATCCACATGAATTTTTACTGGCAACAGGTTCGGCTGATAGAACTGTCAAATTCTGGGACCTTGAAACATTTGAGCTTATAGGATCAGCCGGTCCTGAGACAACTGGAGTGCGTTGTATGACCTTCAATCCTGACGGCAGAACACTTCTTTGTGGGTTGCATGAGAGCCTGAAGGTTTTCTCATGGGAACCAATCAGATCTCATGATGTAGTTGACGTGGGATGGTCCAGACTGTCAGACCTTAATATTCACGAGGGGAAGCTTCTTGGTTGTTCCTACAATCAAAGTTGTGTAGGAGTATGGGTTGTAGATATATCGCGAATTGAGCCTTATGCAGTTGGTGATACTACTAGATTAAACGATCATTCAGTACAGAGATCTAATTCAAGTCGAAATATATCTTTACTGACTGAAAACGCTACAAAGGACAGTTTGGGCAGGCTTTCTATTTCACAAAATTCAGATCCTGTAGGAAAGTTAACAAAATCTGTCGAGAGGTCTTCGGTACCACAAAGTCCAGATCCTATTGACGACTCAAAATCTTTAGCATCCACAGGAACTGTACCTGGTGTGCCTCAAAGGATAAATTCAGATGTTGGTCCAAGGACAAATCCAATTACTTCAATGGCGCTTCCCAACACAACAGCGCCAAAGAGGACTGCAACAAAAATCCATTCAACATCCAATACTTCAATTTTCAACATGTCTGATGTGGCACCTGTAGTTGTCCCCAGAGATAATAATGCTAGATTGGAACATGCAGCTGAAATAAGAAAAGGACTTGCAGCAAGAACGATGCCACTATCCTTGCAATCAAAAGCATCTGATTTTCGAAAATTTTCAGATGTAATAGATGAATTGGAGAGGCCAAATGGTTCTGAGCAAGGTGAGGCGTTTAAAGCCACTGAATCAAGTGGAGATGCAGATAGGAATATAAAAGATAATAGGATAGTTGTTTCTGGGAAACTCAAACCGAATGTCATGATGGAGTCAAATGACAGCTACCAGCATCAAAATTATGATGGTCGTGTGCGTAGAGCAAACAGGGATCCTTCTTCTATGGAAGGTCAAAAAGGAGGAAGAACGCGATTGCTCGTTGGAAACCATGAAAAGAAAGAAGGATCTCCTGATGAGCTTGCTTCCACCAATCTGTCTGGTGTAGCATCTGTTTTCAACACCCATCCAACTAATATGCGAGGATTCTCCCCATGTGCCGAGAAGGAAATGACGTCTGCCAGCGAGGACGATGTCATTGCAGATTTAGTGGAACACCATGATCAAATTATTAGTTCATTGCGGTCCCGTTTAGCCAAATTACAGATAGTCCACAACTATTGGGAAAGGAATGATGTAAAAGGTGCAATTAGTGCAATGGAGAAGATGGCTGATCATGGTGTACTAGCTGATGTAGTGGGCTTTTTGACAGAAAGAACTGACATTGTCACATTGGATATTTGCACTTGTCTCCTGCCTCTCCTTGCAAGCCTTCTTGAAAGTGACATGGATAGGCATCAAGGTATTTCACTGGAGATGCTGCTTAAGCTGGTGAGGGTATTTGGTTCTATGATATATTCTTCTTTATCAGCATCGTCACCTGTCGGTGTCGACATCGAGGCAGAACAAAGGCTGGAGCGATGCAATCTTTGTTTCATCGAGCTTGAAAAGGTCAAACGTTGCCTTCCTGTCCTCACCAGAAGAGGGGGATCCGTTGCTAAGTTTGCACTGGAGCTGAATCTTGCACTTCAAGAAGTTTCATGA

Network for GWHGAAZE012359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	7	39	0.031
PF00400.33	WD40	47	82	4.70E-05
PF00400.33	WD40	88	124	1.90E-07
PF00400.33	WD40	130	166	1.80E-11
PF00400.33	WD40	170	208	1.00E-07
PF13925.7	Katanin_con80	612	769	1.90E-51

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0051013	biological_process	microtubule severing
GO:0008352	cellular_component	katanin complex
GO:0005515	molecular_function	protein binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.123
	SRR3591706	second leaf	23.080
	SRR3591707	mature leaf	17.148
	SRR3591708	Shoot apex	33.876
	SRR3591709	Stem	30.039
	SRR3591710	White floral bud	32.909
	SRR3591711	White flower	26.299
	SRR3591712	Green floral bud	30.907
	SRR3591713	Yellow flower	23.941
SRP173429	SRR8316895	Juvenile bud stage	18.108
	SRR8316896	Juvenile bud stage	23.126
	SRR8316897	Juvenile bud stage	11.574
	SRR8316894	Third green stage	11.386
	SRR8316900	Third green stage	26.259
	SRR8316901	Third green stage	24.693
	SRR8316898	Complete white stage	9.539
	SRR8316899	Complete white stage	33.311
	SRR8316903	Complete white stage	16.932
	SRR8316902	Silver flowering stage	6.265
	SRR8316904	Silver flowering stage	11.822
	SRR8316905	Silver flowering stage	4.687
	SRR8316906	Gold flowering stage	13.807
	SRR8316907	Gold flowering stage	13.015
	SRR8316908	Gold flowering stage	13.076
SRP132670	SRR6706286	Control	25.628
	SRR6706287	Light intensity 50%	26.744
	SRR6706288	Light intensity 20%	28.088
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.718
	CNS0095593	Slightly white alabastrum(diploid) 2	15.942
	CNS0095594	Slightly white alabastrum(diploid) 3	17.308
	CNS0095595	Whole white alabastrum(diploid) 2	18.497
	CNS0095596	Whole white alabastrum(diploid) 3	19.164
	CNS0095597	Whole white alabastrum(diploid) 4	16.572
	CNS0095598	Silvery flower (diploied) 1	19.697
	CNS0095599	Silvery flower (diploied) 2	17.292
	CNS0095600	Silvery flower (diploied) 3	18.155
	CNS0095601	Golden flower (diploid) 1	17.259
	CNS0095602	Golden flower (diploid) 2	18.292
	CNS0095603	Golden flower (diploid) 3	20.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.854
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.212
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.960
	CNS0095610	Silvery flower (tetraploid) 1	22.826
	CNS0095611	Silvery flower (tetraploid) 2	21.972
	CNS0095612	Silvery flower (tetraploid) 3	16.843
	CNS0095613	Golden flower (tetraploid) 1	10.799
	CNS0095614	Golden flower (tetraploid) 2	16.147
	CNS0095615	Golden flower (tetraploid) 3	10.687
CRA001975	CRR073297	Stem 1	20.978
	CRR073298	Stem 2	20.957
	CRR073299	Stem 3	16.828
	CRR073300	Leaf 1	22.248
	CRR073301	Leaf 2	17.295
	CRR073302	Leaf 3	14.408
	CRR073303	Juvenile bud 1	14.782
	CRR073304	Juvenile bud 2	11.866
	CRR073305	Juvenile bud 3	12.887
	CRR073306	Third green 1	6.333
	CRR073307	Third green 2	5.890
	CRR073308	Third green 3	7.205
	CRR073309	Second white 1	4.742
	CRR073310	Second white 2	4.496
	CRR073311	Second white 3	5.386
	CRR073312	Silver flowering 1	3.015
	CRR073313	Silver flowering 2	2.467
	CRR073314	Silver flowering 3	4.299
	CRR073315	Gold flowering 1	10.406
	CRR073316	Gold flowering 2	14.179
	CRR073317	Gold flowering 3	6.782
	CRR073318	Tawny withering 1	23.879
	CRR073319	Tawny withering 2	21.849
	CRR073320	Tawny withering 3	24.547