Gene detail

Detail information of GWHGAAZE012360

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271010.1	0	PREDICTED: alpha-galactosidase-like [Vitis vinifera]
Swissprot	tr\|Q42656\|AGAL_COFAR	0	Alpha-galactosidase (Precursor)
trEMBL	tr\|F6HVX9\|F6HVX9_VITVI	0	Alpha-galactosidase {ECO:0000256\|RuleBase:RU361168}
TAIR10	AT5G08380.1	2E-160	alpha-galactosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84335040	84345696	-
GWHAAZE00000003	mRNA	84335040	84345696	-
GWHAAZE00000003	exon	84335040	84335126	-
GWHAAZE00000003	exon	84335210	84335350	-
GWHAAZE00000003	exon	84335545	84335594	-
GWHAAZE00000003	exon	84335713	84335803	-
GWHAAZE00000003	exon	84336566	84336648	-
GWHAAZE00000003	exon	84336905	84336969	-
GWHAAZE00000003	exon	84337212	84337295	-
GWHAAZE00000003	exon	84337395	84337460	-
GWHAAZE00000003	exon	84337717	84337775	-
GWHAAZE00000003	exon	84338030	84338105	-
GWHAAZE00000003	exon	84338299	84338402	-
GWHAAZE00000003	exon	84338494	84338528	-
GWHAAZE00000003	exon	84338645	84338702	-
GWHAAZE00000003	exon	84341733	84341873	-
GWHAAZE00000003	exon	84341973	84342022	-
GWHAAZE00000003	exon	84342151	84342241	-
GWHAAZE00000003	exon	84342446	84342462	-
GWHAAZE00000003	exon	84342642	84342706	-
GWHAAZE00000003	exon	84342805	84342888	-
GWHAAZE00000003	exon	84342991	84343056	-
GWHAAZE00000003	exon	84343163	84343221	-
GWHAAZE00000003	exon	84343461	84343536	-
GWHAAZE00000003	exon	84343611	84343714	-
GWHAAZE00000003	exon	84343798	84343832	-
GWHAAZE00000003	exon	84343948	84344004	-
GWHAAZE00000003	exon	84344221	84344279	-
GWHAAZE00000003	exon	84345398	84345696	-
GWHAAZE00000003	five_prime_UTR	84345559	84345696	-
GWHAAZE00000003	CDS	84345398	84345558	-
GWHAAZE00000003	CDS	84344221	84344279	-
GWHAAZE00000003	CDS	84343948	84344004	-
GWHAAZE00000003	CDS	84343798	84343832	-
GWHAAZE00000003	CDS	84343611	84343714	-
GWHAAZE00000003	CDS	84343461	84343536	-
GWHAAZE00000003	CDS	84343163	84343221	-
GWHAAZE00000003	CDS	84342991	84343056	-
GWHAAZE00000003	CDS	84342805	84342888	-
GWHAAZE00000003	CDS	84342642	84342706	-
GWHAAZE00000003	CDS	84342446	84342462	-
GWHAAZE00000003	CDS	84342151	84342241	-
GWHAAZE00000003	CDS	84341973	84342022	-
GWHAAZE00000003	CDS	84341733	84341873	-
GWHAAZE00000003	CDS	84338645	84338702	-
GWHAAZE00000003	CDS	84338494	84338528	-
GWHAAZE00000003	CDS	84338299	84338402	-
GWHAAZE00000003	CDS	84338030	84338105	-
GWHAAZE00000003	CDS	84337717	84337775	-
GWHAAZE00000003	CDS	84337395	84337460	-
GWHAAZE00000003	CDS	84337212	84337295	-
GWHAAZE00000003	CDS	84336905	84336969	-
GWHAAZE00000003	CDS	84336566	84336648	-
GWHAAZE00000003	CDS	84335713	84335803	-
GWHAAZE00000003	CDS	84335545	84335594	-
GWHAAZE00000003	CDS	84335210	84335350	-
GWHAAZE00000003	CDS	84335040	84335126	-

Transcript Sequence
>GWHTAAZE012374 TGAAATTTACCGACAACTATGTATATATATATAATACACTCTCTCTCTCTCTCGGTAGTTCCAGAGGTCACTACAACTAGTAGTGAAAGTTAGAATTTCTGGAGAGAGGGAGAAATTAGAGAATTGGAAAAAAGGACAATGGAGAGAAGCAGGATTATGCGTATGTGCATAACTCAATTGCTACTATCTCTATTACTGCTACCAACTTCTGCTTTCACCTTAATGCAACAGTTCACGGATTCAACCATCATTAGACGCAATCTGCTTGCCAATGGTCTCGCCCTCACTCCTCCCATGGGGTGGAATAGTTGGAATCATTTTGCCTGCAATATCGACGAGAAAATCATCAGAGAAACTGCTGATGCGCTGGTTTCCACTGGTCTCTCTAAGCTTGGGTATAAGTATGTCAACATAGATGATTGCTGGGCTGAACTTGCTCGTGACAAAAAGGGAAATCTGGTGCCTAAGAAATCCACTTTTCCTTCTGGCATCAAAGCCCTTGCAGACTACGTTCACAGCAAGGGTCTTAAGCTTGGAATATACTCAGATGCTGGGTATCTCACTTGTAGCCAAAAAATGCCTGGTTCACTTGGTCATGAGGAACAAGACGCAAAAACCTTTGCTTCATGGGGGATTGATTATTTGAAGTATGACAACTGCAACAATGATGGCTCAAAGCCAACCGTTCGGTACCCTGTAATGACCAGAGCCCTAATGAAGGCGGGCCGTCCCATCTTCTTCTCATTATGCGAATGGGGAGATATGCACCCTGCATTATGGGGTGCTAATGTAGGAAATAGCTGGAGAACTACTAATGACATTGCCGATACCTGGGATAGTATGTTGTCTAGAGCCGACATGAACGAAATTTATGCAGAGCTTGCAAGGCCTGGTGGCTGGAATGACCCTGACATGCTTGAGGCGCCTCTTCTTATTGGTTGTGATGTGAGAAATGCAACAAAAGAGATTATCGATATCATTGCCAATAAAGAGGTGATTGCTGTTAACCAAGACCGACTAGGTGTTCAAGCCAAAAAGGTTAGGTCGGAAGGTGATCTTGAGATTTGGGCGGGGCCCCTTTCGGGCTATAGGGTAGCGCTGCTACTAGTTAACCGTGGCCCTTCGCCTAATATTATCACAGCCCAATGGGACGACATTAAAATTCCGCCAAAGAGCGTTGTAACAGCGAGAGATCTATGGGAGCCTGACGCAATGGTTTCTACGGGCCTCTCATCCCTTGGCTACGAGTACATAAATTTGGATGATTGCTGGGCTGAACTGAACAGAGATTCCAAGGGAAATTTGGTAGCTAAAGCAGAGCTTTTTCCTTCTGGAATGAAAGCCCTAGCTGATTATGTGCACAGCAAAGGGCTCAAGATTGGAATTTATGGAGATGCTGGGACATTGACATGTGCCAAGACCATGCCTGGATCACTAGGTTATGAAGAGCAAGATGCCAAAACCTTTGCTTCCTGGGGAATTGATTATCTCAAGTATGATAATTGCCACAACAAAGGAGTGAGTCCACAAGAGAGATATTCGAAGATGAGCAAAGCACTCCTCAAAACAGGAACACCCATCTTCTTCTCTCTATGTGAATGGGGCCAGGACGACCCGGCAACATGGGCTGCTCATATCGGAAATAGCTGGAGAACAACCGGAGATATTAAAGATACGTGGGAGAGTATGATTTCGAAAGCGGATCAAAATGATGCATGGGCATCTTATGCTGGACCGGGCGGATGGAATGATCCGGACATGCTTGAAGTGGGTAATGGAGGTATGTCTACAGAAGAATATCGATCCCACTTTAGCATATGGGCATTAATGAAGGCTCCACTTATACTTGGGTGTGACATTCGGTCCATGGATAATGAGACATTTCAGTTGGTTAGCAACAAGGAGGTCATCGAGGTCAATCAAGATAAGTTGGGCGTTCAAGGAAAGAAAGTAAAGAAAACTGGAGATCTAGAGGTATGGTCAGGACCATTGAGTGGGAAAAGAGTAGCAGTGGTGCTGTGGAACAGAGGAGAATCCAAAACTACAATTACTGCAAGTTTCACTGATATTGGCCTCAGCTCATCAACCACCGTAGATGCTCGTGATTTGTGGACGCATACAACTACACCATCTGTTCGAGATCAACTGAAGGCACTTGTTGAAGCCCATGCATGCAAGATGTACATCCTCATACCAAAATAG

Network for GWHGAAZE012360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16499.6	Melibiase_2	50	260	3.80E-63
PF17801.2	Melibiase_C	304	357	6.00E-11
PF16499.6	Melibiase_2	357	596	5.50E-76
PF17801.2	Melibiase_C	608	684	4.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07407	E3.2.1.22B, galA, rafA	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Glycerolipid metabolism	map00561
		Sphingolipid metabolism	map00600
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.546
	SRR3591706	second leaf	4.225
	SRR3591707	mature leaf	2.473
	SRR3591708	Shoot apex	7.899
	SRR3591709	Stem	1.474
	SRR3591710	White floral bud	2.844
	SRR3591711	White flower	2.292
	SRR3591712	Green floral bud	5.561
	SRR3591713	Yellow flower	0.477
SRP173429	SRR8316895	Juvenile bud stage	10.309
	SRR8316896	Juvenile bud stage	10.742
	SRR8316897	Juvenile bud stage	3.052
	SRR8316894	Third green stage	6.518
	SRR8316900	Third green stage	21.936
	SRR8316901	Third green stage	17.843
	SRR8316898	Complete white stage	3.281
	SRR8316899	Complete white stage	12.702
	SRR8316903	Complete white stage	3.413
	SRR8316902	Silver flowering stage	1.742
	SRR8316904	Silver flowering stage	3.112
	SRR8316905	Silver flowering stage	0.898
	SRR8316906	Gold flowering stage	1.724
	SRR8316907	Gold flowering stage	4.055
	SRR8316908	Gold flowering stage	1.606
SRP132670	SRR6706286	Control	42.747
	SRR6706287	Light intensity 50%	37.963
	SRR6706288	Light intensity 20%	40.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.571
	CNS0095593	Slightly white alabastrum(diploid) 2	9.177
	CNS0095594	Slightly white alabastrum(diploid) 3	8.394
	CNS0095595	Whole white alabastrum(diploid) 2	8.702
	CNS0095596	Whole white alabastrum(diploid) 3	8.901
	CNS0095597	Whole white alabastrum(diploid) 4	8.205
	CNS0095598	Silvery flower (diploied) 1	6.316
	CNS0095599	Silvery flower (diploied) 2	7.101
	CNS0095600	Silvery flower (diploied) 3	4.309
	CNS0095601	Golden flower (diploid) 1	8.520
	CNS0095602	Golden flower (diploid) 2	3.627
	CNS0095603	Golden flower (diploid) 3	4.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.373
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.738
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.608
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.946
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.134
	CNS0095610	Silvery flower (tetraploid) 1	3.049
	CNS0095611	Silvery flower (tetraploid) 2	4.922
	CNS0095612	Silvery flower (tetraploid) 3	2.536
	CNS0095613	Golden flower (tetraploid) 1	0.158
	CNS0095614	Golden flower (tetraploid) 2	0.261
	CNS0095615	Golden flower (tetraploid) 3	1.106
CRA001975	CRR073297	Stem 1	22.403
	CRR073298	Stem 2	24.037
	CRR073299	Stem 3	24.901
	CRR073300	Leaf 1	27.184
	CRR073301	Leaf 2	30.024
	CRR073302	Leaf 3	37.652
	CRR073303	Juvenile bud 1	24.344
	CRR073304	Juvenile bud 2	25.636
	CRR073305	Juvenile bud 3	25.863
	CRR073306	Third green 1	5.713
	CRR073307	Third green 2	4.557
	CRR073308	Third green 3	4.289
	CRR073309	Second white 1	5.333
	CRR073310	Second white 2	0.627
	CRR073311	Second white 3	0.360
	CRR073312	Silver flowering 1	0.476
	CRR073313	Silver flowering 2	0.256
	CRR073314	Silver flowering 3	0.427
	CRR073315	Gold flowering 1	14.834
	CRR073316	Gold flowering 2	26.002
	CRR073317	Gold flowering 3	20.996
	CRR073318	Tawny withering 1	17.002
	CRR073319	Tawny withering 2	16.817
	CRR073320	Tawny withering 3	4.694