Detail information of GWHGAAZE012362


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007048927.10Transducin family protein / WD-40 repeat family protein isoform 1 [Theobroma cacao]
Swissprottr|A8IZG4|CIAO1_CHLRE3E-15Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255|HAMAP-Rule:MF_03037}
trEMBLtr|A0A061DK25|A0A061DK25_THECC0Transducin family protein / WD-40 repeat family protein isoform 1 {ECO:0000313|EMBL:EOX93084.1}
TAIR10AT5G08560.24E-132transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8437413384379542-
GWHAAZE00000003mRNA8437413384379542-
GWHAAZE00000003exon8437413384374378-
GWHAAZE00000003exon8437473584375364-
GWHAAZE00000003exon8437572984375788-
GWHAAZE00000003exon8437586884375969-
GWHAAZE00000003exon8437727184377354-
GWHAAZE00000003exon8437861984379542-
GWHAAZE00000003CDS8437861984379542-
GWHAAZE00000003CDS8437727184377354-
GWHAAZE00000003CDS8437586884375969-
GWHAAZE00000003CDS8437572984375788-
GWHAAZE00000003CDS8437473584375364-
GWHAAZE00000003CDS8437413384374378-
Transcript Sequence

Network for GWHGAAZE012362

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD403343694.20E-05
PF00400.33WD404014350.012
PF00400.33WD404394770.0075
PF00400.33WD405676040.061
PF00400.33WD406106473.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.370
SRR3591706second leaf13.295
SRR3591707mature leaf9.886
SRR3591708Shoot apex26.738
SRR3591709Stem25.579
SRR3591710White floral bud23.837
SRR3591711White flower28.825
SRR3591712Green floral bud32.819
SRR3591713Yellow flower18.294
SRP173429 SRR8316895Juvenile bud stage 16.479
SRR8316896Juvenile bud stage 22.621
SRR8316897Juvenile bud stage 10.696
SRR8316894Third green stage 9.561
SRR8316900Third green stage 23.193
SRR8316901Third green stage 24.709
SRR8316898Complete white stage 10.999
SRR8316899Complete white stage 29.365
SRR8316903Complete white stage 15.002
SRR8316902Silver flowering stage11.760
SRR8316904Silver flowering stage16.421
SRR8316905Silver flowering stage7.645
SRR8316906Gold flowering stage 22.933
SRR8316907Gold flowering stage 19.894
SRR8316908Gold flowering stage 23.373
SRP132670SRR6706286Control26.384
SRR6706287Light intensity 50%25.632
SRR6706288Light intensity 20%25.898
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.525
CNS0095593Slightly white alabastrum(diploid) 221.103
CNS0095594Slightly white alabastrum(diploid) 319.246
CNS0095595Whole white alabastrum(diploid) 218.705
CNS0095596Whole white alabastrum(diploid) 319.186
CNS0095597Whole white alabastrum(diploid) 415.199
CNS0095598Silvery flower (diploied) 118.580
CNS0095599Silvery flower (diploied) 214.352
CNS0095600Silvery flower (diploied) 325.772
CNS0095601Golden flower (diploid) 113.995
CNS0095602Golden flower (diploid) 223.036
CNS0095603Golden flower (diploid) 320.278
CNS0095604Slightly white alabastrum(tetraploid) 121.625
CNS0095605Slightly white alabastrum(tetraploid) 218.222
CNS0095606Slightly white alabastrum(tetraploid) 328.260
CNS0095607Whole white alabastrum(tetraploid) 118.781
CNS0095608Whole white alabastrum(tetraploid) 215.070
CNS0095609Whole white alabastrum(tetraploid) 321.499
CNS0095610Silvery flower (tetraploid) 124.257
CNS0095611Silvery flower (tetraploid) 224.151
CNS0095612Silvery flower (tetraploid) 324.514
CNS0095613Golden flower (tetraploid) 113.953
CNS0095614Golden flower (tetraploid) 218.850
CNS0095615Golden flower (tetraploid) 318.355
CRA001975CRR073297Stem 123.397
CRR073298Stem 221.328
CRR073299Stem 323.341
CRR073300Leaf 125.648
CRR073301Leaf 221.546
CRR073302Leaf 323.353
CRR073303Juvenile bud 121.145
CRR073304Juvenile bud 223.407
CRR073305Juvenile bud 322.664
CRR073306Third green 112.480
CRR073307Third green 29.807
CRR073308Third green 312.136
CRR073309Second white 117.660
CRR073310Second white 213.238
CRR073311Second white 312.957
CRR073312Silver flowering 113.684
CRR073313Silver flowering 213.042
CRR073314Silver flowering 39.718
CRR073315Gold flowering 110.551
CRR073316Gold flowering 212.367
CRR073317Gold flowering 310.525
CRR073318Tawny withering 120.829
CRR073319Tawny withering 217.037
CRR073320Tawny withering 321.192