Gene detail

Detail information of GWHGAAZE012375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40473.1	0	hypothetical protein JCGZ_24472 [Jatropha curcas]
Swissprot	tr\|Q9FIY7\|SM3L3_ARATH	7E-107	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
trEMBL	tr\|F6HVZ2\|F6HVZ2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58855.1}
TAIR10	AT1G50410.1	0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84564908	84573063	+
GWHAAZE00000003	mRNA	84564908	84573063	+
GWHAAZE00000003	exon	84564908	84565114	+
GWHAAZE00000003	exon	84566556	84566793	+
GWHAAZE00000003	exon	84567127	84567518	+
GWHAAZE00000003	exon	84568137	84568208	+
GWHAAZE00000003	exon	84568788	84568865	+
GWHAAZE00000003	exon	84568973	84569828	+
GWHAAZE00000003	exon	84570105	84570235	+
GWHAAZE00000003	exon	84570446	84570667	+
GWHAAZE00000003	exon	84570755	84571243	+
GWHAAZE00000003	exon	84571703	84571912	+
GWHAAZE00000003	exon	84572959	84573063	+
GWHAAZE00000003	five_prime_UTR	84564908	84565114	+
GWHAAZE00000003	five_prime_UTR	84566556	84566597	+
GWHAAZE00000003	CDS	84566598	84566793	+
GWHAAZE00000003	CDS	84567127	84567518	+
GWHAAZE00000003	CDS	84568137	84568208	+
GWHAAZE00000003	CDS	84568788	84568865	+
GWHAAZE00000003	CDS	84568973	84569828	+
GWHAAZE00000003	CDS	84570105	84570235	+
GWHAAZE00000003	CDS	84570446	84570667	+
GWHAAZE00000003	CDS	84570755	84571243	+
GWHAAZE00000003	CDS	84571703	84571912	+
GWHAAZE00000003	CDS	84572959	84573063	+

Transcript Sequence
>GWHTAAZE012389 TTCTAGTTCTTGGCAGTTTCCAATTCCAAGTCCTCCTCACAAAAGATAAAAGCAAAACCTAGGCACAATTTTGAAGATTACAGTTCAAACTTCTCTGTAACTAAGCCACAGCAAACCCTTGATCCGATCGCGATTAGGGCATTCTCAGAATTATTATAATAATAAGGAGGAGAAGAAACACTAATCAGTGTCGGCGACAAACACTAGTTAGGATTCACCATTAGTAGCTCCTTCAAGTTTGTTGCCAAAATGGAAAATCATAGTTCAACTGTAATGGCTGCAATGAATCCAATAGATATTAGTTCATCAGACAGCGATTTTGATGTTTGGGATATAGACGATGATATAGAGCCAGATGCATCAACTGCAAGGGAATCTGCTACTTTGACTAAGCGTAGGAATCTTCCCTCATGGGTGGCGGCTACACATGGACCATGTTTGATGGGTTATGGAAAGCATTCATTTCAACTGCCTCTGAAAAGGAACCTTCAAACACATCTTCAGCCATCTGTGCTCAGTGCCAGGTCAAGCAATCCTTTAGAGAATGTGGGCAGCAGTGAGATGCATGAAACTCATGCAGACACTTTCTATCCTCGATGGTCAAAATTAAATAGTGGGACAGACTACAACAAAGACCATTTTGGTGGGGACAGTGACGATGAAGTAATTATGTATGAGAAAGTCGGTAGTGGGATATTACCCCCATCCTCAATGCACGCAAGGCCCGTTTCAACTGCACAGTATGTTAATTCAAGTGATCATGTTTATCGTTCTGGGGTAGCTGAAGAAAGGGCGAGTGAACATGATGAAAGGCTAGTTTATCAAGCAGCATTACAGGATCTTAACCAACCTAAAGTGGAAGCTTCTTTGCCAGATGGTCTTTTGTCAGTCTCTCTTTTAAGACACCAGAAAATTGCATTGGCGTGGTTGCTTCAGAAGGAAACAGTAAGTCTGCATTGTTTGGGTGGAATTTTGGCTGATGATCAGGGCCTTGGTAAGACCATCTCAATGATTGCCCTCATACAGATGCAAAGGTACTTACAGTCAAAAGCAAAACTAGAAGATCAGTGCAATGAAACAACTGAAGCATTGAATTTGGAGGATGATGATGATAAAGTCACTTCTTCTGTTGATGAAAGAAAGCTGTCTGGAAGTTTCTGTACACCAAGGCCCGCGGCAGGTACATTGGTTGTGTGTCCTGCCTCTGTTCTTCGACAATGGGCTCGGGAGCTAAAAGATAAAGTAGCTAATGAAGCTAAACTTTCTGTATTAATCTATCATGGAAGCAATAGGACTAAGGATCCCATTGAGCTAGCATCATATGACGTGGTTCTCACAACGTATGCTATTGTGACAAATGAAGTTCCAAAGCAACCTTTGGCAGACAATAATGATGATGATGATAGGAAAAATGGTGAGAGGTACGGATTAACTTCGGCTTTCTCTAAGAAACAGAAGAAGGCGTCTAATGTGAGCAAGAAAAGGAAGAAGGGTAGAAATGGAATTGATAATTTTGCTATGGACTGTGCTTCTGGGACCCTTGCAAAAGTGGGTTGGCATAGGGTGATATTAGATGAAGCTCAAACGATAAAGAACCACAGAACACAGGTGGCTAGAGCCTGCTGTGGCCTTCGAGCAAAAAGAAGGTGGTGCCTATCTGGAACTCCGATACAGAATGCAATTGAGGAATTGTTTAGCTACTTTAGATTTTTGCGATATGATCCATATGCTTCCTATAAATCATTTTGCAATGCAATAAAGCATCCAATATCCAGAGATTCAAGTCAAGGATACAAGAAGCTTCAAGCTGTGTTAAGGGCTATAATGCTTCGTCGAACGAAAGGGACATTAATTGACGGGGAGCCTATAATTAACTTACCACCAAAAACAATACATTTGGATAAGGTGGACTTCTCGGCCAAGGAGCGGGCTTTCTATTCCAAACTAGAAACTGATTCCCGTACGCAATTCAAGGCATATGCAGCTGCCGGCACCGTAAATCAAAATTATGCAAATATTCTATTGATGCTTCTGCGCCTTCGCCAGGCTTGTGACCACCCGCTGCTAGTTAAAGGTTTCAATTCTGACACAGCTGGAAGAGCCTCTATGCAGACGGCAAAGAGACTCCCTCGAGATATGCTGCTCAATTTACTGAATCTGCTAGAAACTTCCTTGCCAATATGCCGTGTTTGTGGGGATCCACCTGAAGATGCGGTCATTAGTAGTATGTGTGGGCATATTTTTTGCTATCAGTGTGTATCAGAATACTTAACAGGAGATGACAATACGTGTCCTACATCTAAATGCAAAGAACAACTTGCCGCTGATTTTCTATTTTCAAAAGCTACCTTAAGGAGTTGTATATCTGACGAAGATCTTGATGATAATCCCTCTAGTTCATCCGATAATGAGAATTATTTAGTTCTGCAGAATGATTATAATTCTTCAAAAATCAAAATTGCTCTCGAGATTCTTCAATCACATTGTAAATCAGTGAGTCCAAGTCAAGAACTACATAATTTGGAAGGACCGATAAAAGCTATTGTCTTCTCCCAGTGGACTAGAATGTTGGACTTGGTTGAAGTTTCGTTGAAGAAGACTTGTCTAAACTACAGGAGGCTTGATGGTACAATGAATCTGGGTGCAAGAGACATGGCTGTTGGAGAATTTAACACCGATCCAGAGGTTACTGTTATGCTGATGTCACTGAAAGCCGGTAACCTTGGTCTAAACATGGTTGCTGCCTCTCATGTGATCCTATTGGATCTTTGGTGGAATCCAACCACTGAAGATCAGGCTGTTGACCGAGCCCATAGAATCGGACAGACTCGTCCGGTCACTGTATCACGGATCACTATTAAAGACACAGTTGAAGAGCGCATTCTAAATCTCCAGGAAGAGAAGAGGAAAATGGTTGCATCTGCTTTCGGTGAAGATTATACTGGGGGCTCAGCAACTCGACTCACTGTTGAAGATTTAAAATATCTATTTATGCTCTAG

Network for GWHGAAZE012375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	237	606	2.90E-69
PF13920.7	zf-C3HC4_3	644	689	2.50E-06
PF00271.32	Helicase_C	759	858	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.594
	SRR3591706	second leaf	4.620
	SRR3591707	mature leaf	5.944
	SRR3591708	Shoot apex	10.322
	SRR3591709	Stem	12.260
	SRR3591710	White floral bud	19.880
	SRR3591711	White flower	19.442
	SRR3591712	Green floral bud	17.687
	SRR3591713	Yellow flower	15.420
SRP173429	SRR8316895	Juvenile bud stage	7.219
	SRR8316896	Juvenile bud stage	8.932
	SRR8316897	Juvenile bud stage	4.683
	SRR8316894	Third green stage	3.366
	SRR8316900	Third green stage	9.731
	SRR8316901	Third green stage	9.582
	SRR8316898	Complete white stage	4.897
	SRR8316899	Complete white stage	14.953
	SRR8316903	Complete white stage	9.246
	SRR8316902	Silver flowering stage	5.486
	SRR8316904	Silver flowering stage	8.088
	SRR8316905	Silver flowering stage	3.428
	SRR8316906	Gold flowering stage	10.611
	SRR8316907	Gold flowering stage	11.405
	SRR8316908	Gold flowering stage	11.954
SRP132670	SRR6706286	Control	7.455
	SRR6706287	Light intensity 50%	8.016
	SRR6706288	Light intensity 20%	8.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.839
	CNS0095593	Slightly white alabastrum(diploid) 2	5.910
	CNS0095594	Slightly white alabastrum(diploid) 3	5.608
	CNS0095595	Whole white alabastrum(diploid) 2	5.926
	CNS0095596	Whole white alabastrum(diploid) 3	4.065
	CNS0095597	Whole white alabastrum(diploid) 4	4.964
	CNS0095598	Silvery flower (diploied) 1	6.438
	CNS0095599	Silvery flower (diploied) 2	5.187
	CNS0095600	Silvery flower (diploied) 3	8.926
	CNS0095601	Golden flower (diploid) 1	6.419
	CNS0095602	Golden flower (diploid) 2	9.327
	CNS0095603	Golden flower (diploid) 3	8.802
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.788
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.368
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.454
	CNS0095610	Silvery flower (tetraploid) 1	13.536
	CNS0095611	Silvery flower (tetraploid) 2	8.486
	CNS0095612	Silvery flower (tetraploid) 3	11.502
	CNS0095613	Golden flower (tetraploid) 1	6.606
	CNS0095614	Golden flower (tetraploid) 2	10.001
	CNS0095615	Golden flower (tetraploid) 3	8.122
CRA001975	CRR073297	Stem 1	7.814
	CRR073298	Stem 2	6.791
	CRR073299	Stem 3	3.929
	CRR073300	Leaf 1	12.065
	CRR073301	Leaf 2	11.863
	CRR073302	Leaf 3	4.932
	CRR073303	Juvenile bud 1	6.908
	CRR073304	Juvenile bud 2	4.725
	CRR073305	Juvenile bud 3	8.690
	CRR073306	Third green 1	3.479
	CRR073307	Third green 2	2.877
	CRR073308	Third green 3	4.184
	CRR073309	Second white 1	1.834
	CRR073310	Second white 2	3.201
	CRR073311	Second white 3	5.380
	CRR073312	Silver flowering 1	2.730
	CRR073313	Silver flowering 2	2.040
	CRR073314	Silver flowering 3	3.209
	CRR073315	Gold flowering 1	3.702
	CRR073316	Gold flowering 2	6.191
	CRR073317	Gold flowering 3	2.369
	CRR073318	Tawny withering 1	6.116
	CRR073319	Tawny withering 2	6.711
	CRR073320	Tawny withering 3	6.112