Detail information of GWHGAAZE012378


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011095527.12.6734E-168PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Sesamum indicum]
Swissprottr|Q8VYE2|TIM50_ARATH4E-123Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBLtr|K4CXD4|K4CXD4_SOLLC3E-160Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g006020.2.1}
TAIR10AT1G55900.12E-92Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8459237984596863-
GWHAAZE00000003mRNA8459237984596863-
GWHAAZE00000003exon8459659684596863-
GWHAAZE00000003exon8459483984594927-
GWHAAZE00000003exon8459390484593940-
GWHAAZE00000003exon8459370384593800-
GWHAAZE00000003exon8459348884593601-
GWHAAZE00000003exon8459322784593331-
GWHAAZE00000003exon8459304384593141-
GWHAAZE00000003exon8459260084592735-
GWHAAZE00000003exon8459237984592485-
GWHAAZE00000003CDS8459659684596863-
GWHAAZE00000003CDS8459483984594927-
GWHAAZE00000003CDS8459390484593940-
GWHAAZE00000003CDS8459370384593800-
GWHAAZE00000003CDS8459348884593601-
GWHAAZE00000003CDS8459322784593331-
GWHAAZE00000003CDS8459304384593141-
GWHAAZE00000003CDS8459260084592735-
GWHAAZE00000003CDS8459237984592485-
Transcript Sequence

Network for GWHGAAZE012378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03031.19NIF1873267.30E-30
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.645
SRR3591706second leaf22.817
SRR3591707mature leaf14.542
SRR3591708Shoot apex33.756
SRR3591709Stem23.583
SRR3591710White floral bud33.151
SRR3591711White flower44.512
SRR3591712Green floral bud48.327
SRR3591713Yellow flower45.470
SRP173429 SRR8316895Juvenile bud stage 29.538
SRR8316896Juvenile bud stage 43.439
SRR8316897Juvenile bud stage 21.607
SRR8316894Third green stage 17.979
SRR8316900Third green stage 54.788
SRR8316901Third green stage 50.853
SRR8316898Complete white stage 12.898
SRR8316899Complete white stage 44.087
SRR8316903Complete white stage 22.627
SRR8316902Silver flowering stage17.925
SRR8316904Silver flowering stage21.948
SRR8316905Silver flowering stage9.540
SRR8316906Gold flowering stage 34.675
SRR8316907Gold flowering stage 35.944
SRR8316908Gold flowering stage 39.333
SRP132670SRR6706286Control43.344
SRR6706287Light intensity 50%42.940
SRR6706288Light intensity 20%46.295
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.415
CNS0095593Slightly white alabastrum(diploid) 236.395
CNS0095594Slightly white alabastrum(diploid) 334.021
CNS0095595Whole white alabastrum(diploid) 230.970
CNS0095596Whole white alabastrum(diploid) 338.309
CNS0095597Whole white alabastrum(diploid) 426.034
CNS0095598Silvery flower (diploied) 121.191
CNS0095599Silvery flower (diploied) 220.700
CNS0095600Silvery flower (diploied) 328.455
CNS0095601Golden flower (diploid) 115.232
CNS0095602Golden flower (diploid) 223.388
CNS0095603Golden flower (diploid) 323.772
CNS0095604Slightly white alabastrum(tetraploid) 136.594
CNS0095605Slightly white alabastrum(tetraploid) 231.451
CNS0095606Slightly white alabastrum(tetraploid) 336.806
CNS0095607Whole white alabastrum(tetraploid) 129.165
CNS0095608Whole white alabastrum(tetraploid) 220.778
CNS0095609Whole white alabastrum(tetraploid) 337.347
CNS0095610Silvery flower (tetraploid) 126.755
CNS0095611Silvery flower (tetraploid) 223.951
CNS0095612Silvery flower (tetraploid) 323.798
CNS0095613Golden flower (tetraploid) 115.695
CNS0095614Golden flower (tetraploid) 222.592
CNS0095615Golden flower (tetraploid) 321.141
CRA001975CRR073297Stem 150.343
CRR073298Stem 243.313
CRR073299Stem 339.649
CRR073300Leaf 153.273
CRR073301Leaf 248.684
CRR073302Leaf 350.840
CRR073303Juvenile bud 138.805
CRR073304Juvenile bud 232.991
CRR073305Juvenile bud 344.244
CRR073306Third green 112.356
CRR073307Third green 212.490
CRR073308Third green 313.114
CRR073309Second white 119.505
CRR073310Second white 221.950
CRR073311Second white 315.546
CRR073312Silver flowering 116.757
CRR073313Silver flowering 221.472
CRR073314Silver flowering 312.749
CRR073315Gold flowering 117.817
CRR073316Gold flowering 221.546
CRR073317Gold flowering 319.075
CRR073318Tawny withering 134.779
CRR073319Tawny withering 227.294
CRR073320Tawny withering 330.853