Gene detail

Detail information of GWHGAAZE012380

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18453.1	4.6953E-139	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	1E-57	Transcription factor DIVARICATA
trEMBL	tr\|A0A068VFI4\|A0A068VFI4_COFCA	2E-139	Coffea canephora DH200=94 genomic scaffold, scaffold_237 {ECO:0000313\|EMBL:CDP18453.1}
TAIR10	AT5G08520.1	1E-81	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84630914	84632464	+
GWHAAZE00000003	mRNA	84630914	84632464	+
GWHAAZE00000003	exon	84630914	84631269	+
GWHAAZE00000003	exon	84632008	84632464	+
GWHAAZE00000003	CDS	84630914	84631269	+
GWHAAZE00000003	CDS	84632008	84632464	+

Transcript Sequence
>GWHTAAZE012394 ATGACGGCTGATGTACCGGAGAATGGCCGTGAATGGAGTAGAGAGGAGGACAAGGCATTTGAGAATGCTTTGGCTACATATCCTGAGGATTCTTTAGATAGATGGGAGAAAATTCTTGGTGATGTTGGAGGCAAATCCTTAGAAGAGATTAAACATCACTATGAGCTATTAGTCGATGATGTTAACCGGATTGAATCCGGTTCTGTGCCTCTGCCTAGATATAATTCCCGTGTGGGTGATGAAGGAATTGGCAAGAAAGGTGGCAATTTGGGAAACTTTAATAGTGATTCCATCAAGGGTTCAAGGTCGGATCAAGAACGGCGTAAGGGACTTGCTTGGACAGAGGATGAGCACAGATTATTTCTTCTCGGTTTGGACAAATATGGGAAAGGAGATTGGAGAAGTATATCCCGAAACTTTGTAGTGACAAGAACACCCACGCAAGTGGCTAGCCACGCACAAAAGTACTTTATCCGCTTAAACTCCATGAACAAAGATAGGAGGCGATCGAGCATTCACGACATAACTAGCGTTAACAACGGTGACATATCAGTGCCTCAAGGACCAATCACAGGCCAGACAAATGGCTCTTCCACAGGAGTTTCATCTGGAAAATCAAGCAAACATCCCCCTCAATCCCAGCCAGCTCCCGATGTTGACGGCATCTATGGTGGAACCACCATCGGGCAACCAGTGGGCTCCCTTGTTTCAGCGTTAGGCACCCCCGTGAATCTTCCACTGCCAGCACACATGGCATACGGTGTTGGTCCCGTGACGTACCCGATGATGCCTCACACGCCTGGTCATAGGTGA

Network for GWHGAAZE012380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	11	54	3.60E-07
PF00249.32	Myb_DNA-binding	112	156	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.836
	SRR3591706	second leaf	1.854
	SRR3591707	mature leaf	3.473
	SRR3591708	Shoot apex	3.745
	SRR3591709	Stem	0.732
	SRR3591710	White floral bud	3.584
	SRR3591711	White flower	1.680
	SRR3591712	Green floral bud	10.376
	SRR3591713	Yellow flower	0.503
SRP173429	SRR8316895	Juvenile bud stage	3.668
	SRR8316896	Juvenile bud stage	6.937
	SRR8316897	Juvenile bud stage	1.058
	SRR8316894	Third green stage	2.430
	SRR8316900	Third green stage	7.473
	SRR8316901	Third green stage	4.722
	SRR8316898	Complete white stage	1.455
	SRR8316899	Complete white stage	10.835
	SRR8316903	Complete white stage	1.836
	SRR8316902	Silver flowering stage	0.177
	SRR8316904	Silver flowering stage	0.541
	SRR8316905	Silver flowering stage	0.380
	SRR8316906	Gold flowering stage	0.396
	SRR8316907	Gold flowering stage	0.490
	SRR8316908	Gold flowering stage	0.835
SRP132670	SRR6706286	Control	8.607
	SRR6706287	Light intensity 50%	7.716
	SRR6706288	Light intensity 20%	9.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.327
	CNS0095593	Slightly white alabastrum(diploid) 2	6.136
	CNS0095594	Slightly white alabastrum(diploid) 3	3.930
	CNS0095595	Whole white alabastrum(diploid) 2	5.613
	CNS0095596	Whole white alabastrum(diploid) 3	6.793
	CNS0095597	Whole white alabastrum(diploid) 4	5.016
	CNS0095598	Silvery flower (diploied) 1	2.017
	CNS0095599	Silvery flower (diploied) 2	0.878
	CNS0095600	Silvery flower (diploied) 3	1.011
	CNS0095601	Golden flower (diploid) 1	0.912
	CNS0095602	Golden flower (diploid) 2	1.646
	CNS0095603	Golden flower (diploid) 3	1.701
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.495
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.959
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.600
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.416
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.671
	CNS0095610	Silvery flower (tetraploid) 1	0.916
	CNS0095611	Silvery flower (tetraploid) 2	2.026
	CNS0095612	Silvery flower (tetraploid) 3	0.577
	CNS0095613	Golden flower (tetraploid) 1	0.679
	CNS0095614	Golden flower (tetraploid) 2	1.419
	CNS0095615	Golden flower (tetraploid) 3	0.271
CRA001975	CRR073297	Stem 1	10.709
	CRR073298	Stem 2	10.123
	CRR073299	Stem 3	11.831
	CRR073300	Leaf 1	7.186
	CRR073301	Leaf 2	7.914
	CRR073302	Leaf 3	7.133
	CRR073303	Juvenile bud 1	11.053
	CRR073304	Juvenile bud 2	3.501
	CRR073305	Juvenile bud 3	12.348
	CRR073306	Third green 1	0.386
	CRR073307	Third green 2	0.270
	CRR073308	Third green 3	0.283
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.240
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.456
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.669
	CRR073316	Gold flowering 2	2.730
	CRR073317	Gold flowering 3	4.554
	CRR073318	Tawny withering 1	2.714
	CRR073319	Tawny withering 2	1.950
	CRR073320	Tawny withering 3	2.018