Detail information of GWHGAAZE012398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006348504.10PREDICTED: succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial-like [Solanum tuberosum]
Swissprottr|Q8GTQ9|SUCA1_SOLLC0Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial (Precursor)
trEMBLtr|M1BCU6|M1BCU6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400042326}
TAIR10AT5G23250.13E-160Succinyl-CoA ligase, alpha subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8484191284846614-
GWHAAZE00000003mRNA8484191284846614-
GWHAAZE00000003exon8484191284842048-
GWHAAZE00000003exon8484303784843118-
GWHAAZE00000003exon8484329584843356-
GWHAAZE00000003exon8484369284843815-
GWHAAZE00000003exon8484495484845124-
GWHAAZE00000003exon8484582584846034-
GWHAAZE00000003exon8484638484846614-
GWHAAZE00000003CDS8484638484846614-
GWHAAZE00000003CDS8484582584846034-
GWHAAZE00000003CDS8484495484845124-
GWHAAZE00000003CDS8484369284843815-
GWHAAZE00000003CDS8484329584843356-
GWHAAZE00000003CDS8484303784843118-
GWHAAZE00000003CDS8484191284842048-
Transcript Sequence

Network for GWHGAAZE012398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02629.20CoA_binding481411.40E-32
PF00549.20Ligase_CoA1943152.30E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01899LSC1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Propanoate metabolismmap00640

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0048037molecular_functioncofactor binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf202.947
SRR3591706second leaf70.399
SRR3591707mature leaf40.885
SRR3591708Shoot apex128.556
SRR3591709Stem91.821
SRR3591710White floral bud136.304
SRR3591711White flower178.696
SRR3591712Green floral bud185.577
SRR3591713Yellow flower146.862
SRP173429 SRR8316895Juvenile bud stage 88.933
SRR8316896Juvenile bud stage 129.224
SRR8316897Juvenile bud stage 68.349
SRR8316894Third green stage 57.181
SRR8316900Third green stage 227.980
SRR8316901Third green stage 214.256
SRR8316898Complete white stage 113.947
SRR8316899Complete white stage 193.358
SRR8316903Complete white stage 135.562
SRR8316902Silver flowering stage143.475
SRR8316904Silver flowering stage168.555
SRR8316905Silver flowering stage88.394
SRR8316906Gold flowering stage 271.451
SRR8316907Gold flowering stage 299.929
SRR8316908Gold flowering stage 327.964
SRP132670SRR6706286Control235.163
SRR6706287Light intensity 50%234.130
SRR6706288Light intensity 20%243.672
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1100.643
CNS0095593Slightly white alabastrum(diploid) 2112.284
CNS0095594Slightly white alabastrum(diploid) 398.856
CNS0095595Whole white alabastrum(diploid) 2130.857
CNS0095596Whole white alabastrum(diploid) 3133.805
CNS0095597Whole white alabastrum(diploid) 4120.980
CNS0095598Silvery flower (diploied) 164.242
CNS0095599Silvery flower (diploied) 270.969
CNS0095600Silvery flower (diploied) 3191.813
CNS0095601Golden flower (diploid) 159.751
CNS0095602Golden flower (diploid) 2142.511
CNS0095603Golden flower (diploid) 3139.477
CNS0095604Slightly white alabastrum(tetraploid) 1163.108
CNS0095605Slightly white alabastrum(tetraploid) 2143.903
CNS0095606Slightly white alabastrum(tetraploid) 3148.673
CNS0095607Whole white alabastrum(tetraploid) 1155.870
CNS0095608Whole white alabastrum(tetraploid) 2151.713
CNS0095609Whole white alabastrum(tetraploid) 3199.859
CNS0095610Silvery flower (tetraploid) 1190.189
CNS0095611Silvery flower (tetraploid) 2168.651
CNS0095612Silvery flower (tetraploid) 3198.302
CNS0095613Golden flower (tetraploid) 1105.312
CNS0095614Golden flower (tetraploid) 2162.259
CNS0095615Golden flower (tetraploid) 3134.955
CRA001975CRR073297Stem 1152.360
CRR073298Stem 2149.339
CRR073299Stem 3172.661
CRR073300Leaf 1227.893
CRR073301Leaf 2229.581
CRR073302Leaf 3235.112
CRR073303Juvenile bud 1289.552
CRR073304Juvenile bud 2250.898
CRR073305Juvenile bud 3272.227
CRR073306Third green 1267.994
CRR073307Third green 2233.625
CRR073308Third green 3226.197
CRR073309Second white 1409.711
CRR073310Second white 2261.103
CRR073311Second white 3238.848
CRR073312Silver flowering 1301.861
CRR073313Silver flowering 2395.841
CRR073314Silver flowering 3287.571
CRR073315Gold flowering 165.413
CRR073316Gold flowering 278.064
CRR073317Gold flowering 381.762
CRR073318Tawny withering 1170.823
CRR073319Tawny withering 2129.690
CRR073320Tawny withering 3161.737