Gene detail

Detail information of GWHGAAZE012407

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI27137.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9M995\|GUN5_ARATH	Endoglucanase 5 (Precursor)
trEMBL	tr\|D7T9G6\|D7T9G6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27137.3}
TAIR10	AT1G48930.1	glycosyl hydrolase 9C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85007803	85012371	+
GWHAAZE00000003	mRNA	85007803	85012371	+
GWHAAZE00000003	exon	85007803	85008009	+
GWHAAZE00000003	exon	85008246	85008458	+
GWHAAZE00000003	exon	85009313	85009513	+
GWHAAZE00000003	exon	85009631	85009717	+
GWHAAZE00000003	exon	85009826	85009990	+
GWHAAZE00000003	exon	85010615	85010738	+
GWHAAZE00000003	exon	85010831	85010931	+
GWHAAZE00000003	exon	85011110	85011497	+
GWHAAZE00000003	exon	85011582	85011623	+
GWHAAZE00000003	exon	85012082	85012371	+
GWHAAZE00000003	CDS	85007803	85008009	+
GWHAAZE00000003	CDS	85008246	85008458	+
GWHAAZE00000003	CDS	85009313	85009513	+
GWHAAZE00000003	CDS	85009631	85009717	+
GWHAAZE00000003	CDS	85009826	85009990	+
GWHAAZE00000003	CDS	85010615	85010738	+
GWHAAZE00000003	CDS	85010831	85010931	+
GWHAAZE00000003	CDS	85011110	85011497	+
GWHAAZE00000003	CDS	85011582	85011623	+
GWHAAZE00000003	CDS	85012082	85012371	+

Transcript Sequence
>GWHTAAZE012421 ATGGTGAGTTTTGGTTGTTCTTGTGTCCTTTTGGGCTTGGTTTTGTTAGTTGGCATAAAGGCAGCCATTGGTACCGGTTTCAACTACGGCGAAGCACTTGATAAGAGCTTGATGTTCTTCGAGGCACAAAGGTCCGGTAAAATACCTGCTACTCAGCGTGTCAAATGGCGTGGCGATTCTGGACTAGCTGATGGTTTTCATCAAGGAGTGGACTTGGTGGGAGGATATTATGATGCAGGGGATCATGTGAAATTTGGGTTGCCAATGGCATATAGTGTGACCATGCTCTCATGGGGAACCATGGAGTTCAGAAAAGAGATAACTGGTCTTGACCAGATGGGACACACTTTGGCTGCCATCAAATGGGGCACTGATTACTTCATCAAATCACATACTCAGCCCGATGTTCTATGGGGACAGGTGGGTGATGGAGACTCGGACCACTATTGTTGGGAGAGAGCTGAGGACATGACTACACCTAGGAATGCATACAAGGTGGATAGGAATAATCCAGGGTCAGACCTAGCCGGTGAAACCGCTGCGGCCATGGCGGCTGCTTCTATTGCATTCAAGCCTTACAACTCTTCCTACTCTAACTTACTCTTAATCCATGCCAAACAGCTTTTCTCATTTGCTGATAGATTTAGGGGATTGTACATCGATTCCATCCAGTGCGCTAAGAATTTCTATACATCGTCAGGCTATTCGGATGAACTATTGTGGGCTGCTACGTGGCTGTATAAAGCAACAAGAGATGAATATTATTTGAAGTATGTGGTGGATAATGCTGCTTCTATGGGTGGAACTGGTTGGGCTGTCAAAGAATTCTCTTGGGACAACAAATATGCTGGGGTCCAAATTCTCCTCTCAAAGGTTCTATTGGAGGGAGCTGGTGGGGCATATACTTCAACACTGAAACAATATCAGGCTAAAGCAGATTTCTTCGCGTGTGCTTGCCAGCAAAAGAATGATGGCTACAATGTCCCTATGACTCCTGGGGGATTGATTTATGTGCACGAATGGAACAACATGCAATATGCCGCATCTGCTGCATTTCTTCTGGCTGTCTACTCCGATTATCTATCTGCATCGAATTCTGGTGACTACATTCTTGGCAAAAATCCTGAGTCCATGAGCTACTTAGTTGGGTACGGCCAAAAATATCCAGTCCAAGTTCACCATAGGGGCGCTTCCATTGCTTCGATTTCTGTTTTTCATTCATTGGTCGGTTGTGCCCAAGGATTCGAAACATGGTATCACCGCCCTCAAGGAAATCCCAACATTATATATGGAGCCCTAGTTGGGGGTCCCAACAAGAATGACGCCTTCATTGATGATCGGTCCAATTATGAACAAACTGAACCTACAATATCTGGTACTGCCCCTCTCGTAGGACTATTCTCCAAGCTACAAGCCACGACTGGAAATTTAGGGGCAGGTTCTTATCATCAAGAATCACCAAAACCTTACCAACAAACAACTCCAAGTTCCTACCCAAATAAAGCACCAGTACCCCACACAAAATCAGAAGTTCCAGTTGAATTCTTTCACTCCATAACTGATTCATGGACAATTGGAAGAATGACATATTACCGTCACAAGGTGACGATTAAGAACACTTCTGAGAAAACAATCACAGATCTAAAATTGACAGTTGAAAATCTCACTGGATCTGTTTGGGGTCTCGCTCCAACTCGAGAGAAGAACACTTACGAGCTTCCTCAATGGCTGAATGTGTTGAAATCTGGTTCTGAGTGTAGTTTCATTTATGTTCAAGGGGGCCCTCAAGCTAAAGTTACAGTTCAAAGCTACCATTGA

Network for GWHGAAZE012407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	29	466	3.40E-143
PF09478.11	CBM49	514	592	3.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.506
	SRR3591706	second leaf	0.499
	SRR3591707	mature leaf	1.072
	SRR3591708	Shoot apex	11.400
	SRR3591709	Stem	0.228
	SRR3591710	White floral bud	0.049
	SRR3591711	White flower	0.114
	SRR3591712	Green floral bud	0.020
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.471
	SRR8316896	Juvenile bud stage	1.555
	SRR8316897	Juvenile bud stage	0.559
	SRR8316894	Third green stage	0.094
	SRR8316900	Third green stage	0.144
	SRR8316901	Third green stage	0.341
	SRR8316898	Complete white stage	0.228
	SRR8316899	Complete white stage	0.421
	SRR8316903	Complete white stage	0.145
	SRR8316902	Silver flowering stage	0.615
	SRR8316904	Silver flowering stage	1.027
	SRR8316905	Silver flowering stage	0.265
	SRR8316906	Gold flowering stage	1.399
	SRR8316907	Gold flowering stage	1.617
	SRR8316908	Gold flowering stage	0.134
SRP132670	SRR6706286	Control	0.292
	SRR6706287	Light intensity 50%	0.238
	SRR6706288	Light intensity 20%	0.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.855
	CNS0095593	Slightly white alabastrum(diploid) 2	0.118
	CNS0095594	Slightly white alabastrum(diploid) 3	0.231
	CNS0095595	Whole white alabastrum(diploid) 2	0.074
	CNS0095596	Whole white alabastrum(diploid) 3	0.076
	CNS0095597	Whole white alabastrum(diploid) 4	0.101
	CNS0095598	Silvery flower (diploied) 1	0.797
	CNS0095599	Silvery flower (diploied) 2	0.443
	CNS0095600	Silvery flower (diploied) 3	1.218
	CNS0095601	Golden flower (diploid) 1	0.743
	CNS0095602	Golden flower (diploid) 2	0.724
	CNS0095603	Golden flower (diploid) 3	0.891
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.198
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.145
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.026
	CNS0095610	Silvery flower (tetraploid) 1	0.667
	CNS0095611	Silvery flower (tetraploid) 2	0.515
	CNS0095612	Silvery flower (tetraploid) 3	0.190
	CNS0095613	Golden flower (tetraploid) 1	0.232
	CNS0095614	Golden flower (tetraploid) 2	0.076
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	1.890
	CRR073298	Stem 2	2.133
	CRR073299	Stem 3	1.706
	CRR073300	Leaf 1	0.067
	CRR073301	Leaf 2	0.004
	CRR073302	Leaf 3	0.315
	CRR073303	Juvenile bud 1	0.070
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.277
	CRR073306	Third green 1	0.681
	CRR073307	Third green 2	0.775
	CRR073308	Third green 3	0.818
	CRR073309	Second white 1	0.672
	CRR073310	Second white 2	0.693
	CRR073311	Second white 3	0.704
	CRR073312	Silver flowering 1	0.304
	CRR073313	Silver flowering 2	0.056
	CRR073314	Silver flowering 3	0.347
	CRR073315	Gold flowering 1	0.521
	CRR073316	Gold flowering 2	0.757
	CRR073317	Gold flowering 3	0.200
	CRR073318	Tawny withering 1	2.135
	CRR073319	Tawny withering 2	0.245
	CRR073320	Tawny withering 3	1.951