Gene detail

Detail information of GWHGAAZE012418

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN32788.1	0	Histidinol-phosphate aminotransferase, chloroplastic [Glycine soja]
Swissprot	tr\|O82030\|HIS8_TOBAC	0	Histidinol-phosphate aminotransferase, chloroplastic (Precursor)
trEMBL	tr\|I1MNX6\|I1MNX6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G27220.5}
TAIR10	AT5G10330.2	2E-174	histidinol phosphate aminotransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85164741	85169653	+
GWHAAZE00000003	mRNA	85164741	85169653	+
GWHAAZE00000003	exon	85164741	85164977	+
GWHAAZE00000003	exon	85165650	85165733	+
GWHAAZE00000003	exon	85165886	85166040	+
GWHAAZE00000003	exon	85166193	85166290	+
GWHAAZE00000003	exon	85166379	85166568	+
GWHAAZE00000003	exon	85166830	85166987	+
GWHAAZE00000003	exon	85167282	85167424	+
GWHAAZE00000003	exon	85167563	85167703	+
GWHAAZE00000003	exon	85169522	85169653	+
GWHAAZE00000003	CDS	85164741	85164977	+
GWHAAZE00000003	CDS	85165650	85165733	+
GWHAAZE00000003	CDS	85165886	85166040	+
GWHAAZE00000003	CDS	85166193	85166290	+
GWHAAZE00000003	CDS	85166379	85166568	+
GWHAAZE00000003	CDS	85166830	85166987	+
GWHAAZE00000003	CDS	85167282	85167424	+
GWHAAZE00000003	CDS	85167563	85167703	+
GWHAAZE00000003	CDS	85169522	85169653	+

Transcript Sequence
>GWHTAAZE012432 ATGGGCGTGATTAATGCATATAATGCTTCTTCATCTCTTTGCATGATCAAATCCCAAATTGACTTTCTCTCAAATCGACCCAAATTTTCGTTTGAAGCAACTTCTTCAAATCAAGGGAGACTCACTCGTATGGCCTCAACAGTACCTGTAAAACAGGTTAAAGATTTGACTGGGGATTCTTTTATCCGACCCCATCTTCGAAAACTTTCCCCATATCAGTCCATTTTGCCTTTTGAGGTTTTGTCAACTCGTCTTGGGAGAAAACCTGAGGACATTATAAAACTAGACGCAAATGAAAATCCATACGGTCCACCTCCAGAGGTTTTTGAGGCTTTGGGAGCAATGAAATTCCCGTATATTTATCCTGACCCTGAAACCCGTAGGTTACGTGCTGCCCTTTCTGAGGATTCTGGCCTTGAATCTGAATATATTCTTGTAGGCTGTGGTGCAGATGAGCTCATTGATTTGATTATGAGATGCGTATTGGATCCAGGAGACAAAATTGTGGACTGCCCTCCAACCTTTACAATGTATGGATTTGATGCAGCTGTCAATGGCGCGCTTGTAATTAAGGGTTCTCGTCCTCAATATTTTCTTTATATATATGTATTGTATTATGTAAGCATTGATGCTCACTGTCATCTGGACCTAGCAGTACCCCGAAATCCGGACTTCAGCTTGGATGTAAAATTGATTGCTGAAGTTGTTGAGAAAGAGAAGCCAAAGTGCATTTTTCTAACGTCACCCAACAATCCAGATGGGAGTATAATTAACGATGAAGATCTCTTGAAGATACTTGATCTGCCTATACTGGTTGTACTGGATGAAGCATACATTGAATTTTCGGGAATCGAATCTAGGATGAGATGGGTCAAGAAGCATGAGAATCTAATTGTCCTTCGCACATTTAGCAAAAGAGCTGGTTTAGCTGGACTTCGTGTGGGGTATGGAGCATTTCCTTTGAGCATTATTGGGTACCTTTGGAGGGCAAAGCAACCGTATAATGTGTCTGTTGCTGCCGAAGTTTCTGCGTGTGCAGCACTAAAAAATCCCACTTATTTGGAGAATGTTAAAGTGGCACTGGTGCAAGAAAGGGAGAGGCTGTACAAACTTTTGAAAGAAGTGCCATTTCTCAATCCCTATCCAAGCTATTCAAATTTTATTCTTTGTGAGGTTACCTCTGGAAGGGATGCTAAGAAACTAAAGGAAGACCTTGCAAAAATGGGAGTGATGATTCGTCACTACAATAACAAAGAATTGAGCGGTTATGTTCGGGTCTCTGTTGGTAAGCCTCAACAAACTGATGTGTTAATGGACTGCCTCAGTCGCTTATCTTGA

Network for GWHGAAZE012418

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	91	439	4.30E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00817	hisC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
		Novobiocin biosynthesis	map00401

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0000105	biological_process	histidine biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0004400	molecular_function	histidinol-phosphate transaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.006
	SRR3591706	second leaf	10.058
	SRR3591707	mature leaf	9.329
	SRR3591708	Shoot apex	24.109
	SRR3591709	Stem	16.409
	SRR3591710	White floral bud	10.745
	SRR3591711	White flower	22.551
	SRR3591712	Green floral bud	30.178
	SRR3591713	Yellow flower	13.846
SRP173429	SRR8316895	Juvenile bud stage	18.930
	SRR8316896	Juvenile bud stage	28.177
	SRR8316897	Juvenile bud stage	12.890
	SRR8316894	Third green stage	10.697
	SRR8316900	Third green stage	33.116
	SRR8316901	Third green stage	27.753
	SRR8316898	Complete white stage	8.991
	SRR8316899	Complete white stage	24.133
	SRR8316903	Complete white stage	12.035
	SRR8316902	Silver flowering stage	11.415
	SRR8316904	Silver flowering stage	16.913
	SRR8316905	Silver flowering stage	7.680
	SRR8316906	Gold flowering stage	35.399
	SRR8316907	Gold flowering stage	31.595
	SRR8316908	Gold flowering stage	42.687
SRP132670	SRR6706286	Control	13.185
	SRR6706287	Light intensity 50%	15.774
	SRR6706288	Light intensity 20%	15.587
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.928
	CNS0095593	Slightly white alabastrum(diploid) 2	23.172
	CNS0095594	Slightly white alabastrum(diploid) 3	18.107
	CNS0095595	Whole white alabastrum(diploid) 2	16.628
	CNS0095596	Whole white alabastrum(diploid) 3	19.215
	CNS0095597	Whole white alabastrum(diploid) 4	15.129
	CNS0095598	Silvery flower (diploied) 1	18.846
	CNS0095599	Silvery flower (diploied) 2	15.425
	CNS0095600	Silvery flower (diploied) 3	25.592
	CNS0095601	Golden flower (diploid) 1	15.701
	CNS0095602	Golden flower (diploid) 2	18.545
	CNS0095603	Golden flower (diploid) 3	18.469
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.831
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.945
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.559
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.440
	CNS0095610	Silvery flower (tetraploid) 1	35.827
	CNS0095611	Silvery flower (tetraploid) 2	36.434
	CNS0095612	Silvery flower (tetraploid) 3	47.747
	CNS0095613	Golden flower (tetraploid) 1	23.043
	CNS0095614	Golden flower (tetraploid) 2	35.370
	CNS0095615	Golden flower (tetraploid) 3	16.219
CRA001975	CRR073297	Stem 1	16.676
	CRR073298	Stem 2	16.944
	CRR073299	Stem 3	17.762
	CRR073300	Leaf 1	12.603
	CRR073301	Leaf 2	13.782
	CRR073302	Leaf 3	13.522
	CRR073303	Juvenile bud 1	12.578
	CRR073304	Juvenile bud 2	10.020
	CRR073305	Juvenile bud 3	14.188
	CRR073306	Third green 1	4.415
	CRR073307	Third green 2	3.739
	CRR073308	Third green 3	4.128
	CRR073309	Second white 1	27.345
	CRR073310	Second white 2	18.203
	CRR073311	Second white 3	16.797
	CRR073312	Silver flowering 1	16.729
	CRR073313	Silver flowering 2	17.026
	CRR073314	Silver flowering 3	15.224
	CRR073315	Gold flowering 1	14.322
	CRR073316	Gold flowering 2	15.495
	CRR073317	Gold flowering 3	10.983
	CRR073318	Tawny withering 1	14.653
	CRR073319	Tawny withering 2	11.091
	CRR073320	Tawny withering 3	15.098