Gene detail

Detail information of GWHGAAZE012434

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07972.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|D2XNQ8\|FLOT1_MEDTR	0	Flotillin-like protein 1
trEMBL	tr\|A0A068UI48\|A0A068UI48_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_29 {ECO:0000313\|EMBL:CDP07972.1}
TAIR10	AT5G25250.1	6E-173	SPFH/Band 7/PHB domain-containing membrane-associated protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85349541	85351571	+
GWHAAZE00000003	mRNA	85349541	85351571	+
GWHAAZE00000003	exon	85349541	85350498	+
GWHAAZE00000003	exon	85351020	85351571	+
GWHAAZE00000003	five_prime_UTR	85349541	85349568	+
GWHAAZE00000003	CDS	85349569	85350498	+
GWHAAZE00000003	CDS	85351020	85351571	+

Transcript Sequence
>GWHTAAZE012448 AGGATCAAGAAAGTAAGCAACAGCAAACATGTATTACAGTGTGGCCAAGGCGTCCGAAATTCTGGTAATCACCGGGGCTGGTATTGACGAAATAAAGATTGCAAAGAAGGCATTTGTATGGCCATTTCAAAAATGCCGTGTTTTCGATATAACACCTGTTAACTACACCTTCGAAGTAAATGCCATGAGCGCCGAGAAGCTTGCCTTTCTCCTCCCCGCCGTTTTCACTATTGGCCCAAAAACCGATGACTACGACAGCCTCGTCAAATACGCAAAACTCCTATCTCACCACAACCGCCACTCCCAAGATGTAAAGGAGCTTGTCCAAGGTGTCATTGAGGGGGAAACTCGGGTCCTTGCTGCCTCAATGACCATGGAAGAAATCTTCAAAGGCACCAAAGAATTTAAACAAGAAGTTTTCGCAAAGGTTCAGCTTGAGCTCAGCCAGTTTGGACTTTTGATCTATAATTCCAATATTAAGCAGCTAGTTGACGTTAGAGGGCACGAGTATTTCTCCTATTTGGGGCAAAAAACCCAAATGGAGGCTGCAAATCAGGCAAAAATTGATGTGGCTGAGGCCAAGATGAAGGGAGAGATTGGGTCTAAGCAGAGACAGGGGCAGACAATTCAGAATGCAGCCAAGATTGATGCTGAAACAAAGGTGATAGCCACCCAGAGGGAAGGGCAGGGGAAAAAGGAGGAGATTAAGGTGAGGTCCGAGGTGAAGATTTTCGAGAACCAGAGAGAGGCTGATGTGGCCGAGGCAAACGCTGAGCTGGCCACCAAGAAGGCTGGGTGGGCCCAGCAGTCGAAGATGGCTGAAGTTGAGTCTATCAAGGCTGTGGCAATTCGGGAGGCTGAGCTGCAGAGAGAGGTCGAGAGAAAGAACGCGTTGACTCAGACGGAGAAGCTGAAGGCCGAGTTTCTTAGCAAGGCTAGTGTTGAGTATGACATCAAGGTCCAAGAGGCAAACTCGGATCTCTACAATAAGCAGAAGGCAGCGGAGGCCAAGCTCTATGAGAATGAAAAAGCTGCTGAGGCTCAAAGAATGACAGCAGATGCCCAACTATATGCGGCCCAACAGGCTGCAGACGGGGAGCTATATGCCAAAAGGAAAGAGGCCGAAGGACTGGTGGCTCTTGCAGAAGCAGAAGGCGTTTATCTCAGCACATTATCCAAGGCGCTGGGAGGAGACTACAATAAGTTGAGGGATTACATGATGATTAATGGTGGAATGTTCAAAGATATTGCCAAGCTTAATGCTGAAGCAATCAGGGGGCTGCAGCCCAAGATCAGCGTGTGGACCAACGGTGCTGGTGGAGAGTCGGCAGCAGCTGGAGGAGGAACTGGTGGTTCCGCTGCAATGAAAGAGGTGGCCTCGGTTTACAGGGCGTTGCCGCCGCTGTTTCAGACTGTTAATGAGCAAACTGGTATGTTGCCTCCACCATGGATGGGCAGTCTCTCTCTTACTGGCTCTGAATTGGGCTCGGCCAACCAGCACATGCAGTGA

Network for GWHGAAZE012434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01145.26	Band_7	7	185	1.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07192	FLOT	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.122
	SRR3591706	second leaf	0.300
	SRR3591707	mature leaf	0.366
	SRR3591708	Shoot apex	0.213
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.851
	SRR3591711	White flower	1.140
	SRR3591712	Green floral bud	0.786
	SRR3591713	Yellow flower	0.172
SRP173429	SRR8316895	Juvenile bud stage	5.018
	SRR8316896	Juvenile bud stage	7.897
	SRR8316897	Juvenile bud stage	1.278
	SRR8316894	Third green stage	1.147
	SRR8316900	Third green stage	1.859
	SRR8316901	Third green stage	1.983
	SRR8316898	Complete white stage	0.241
	SRR8316899	Complete white stage	2.652
	SRR8316903	Complete white stage	0.506
	SRR8316902	Silver flowering stage	0.117
	SRR8316904	Silver flowering stage	0.178
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.210
	SRR8316907	Gold flowering stage	0.574
	SRR8316908	Gold flowering stage	0.293
SRP132670	SRR6706286	Control	4.042
	SRR6706287	Light intensity 50%	3.580
	SRR6706288	Light intensity 20%	3.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.843
	CNS0095593	Slightly white alabastrum(diploid) 2	1.598
	CNS0095594	Slightly white alabastrum(diploid) 3	3.943
	CNS0095595	Whole white alabastrum(diploid) 2	1.499
	CNS0095596	Whole white alabastrum(diploid) 3	1.379
	CNS0095597	Whole white alabastrum(diploid) 4	2.442
	CNS0095598	Silvery flower (diploied) 1	1.852
	CNS0095599	Silvery flower (diploied) 2	1.526
	CNS0095600	Silvery flower (diploied) 3	1.712
	CNS0095601	Golden flower (diploid) 1	1.299
	CNS0095602	Golden flower (diploid) 2	1.968
	CNS0095603	Golden flower (diploid) 3	1.863
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.718
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.703
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.608
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.973
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.591
	CNS0095612	Silvery flower (tetraploid) 3	0.339
	CNS0095613	Golden flower (tetraploid) 1	0.468
	CNS0095614	Golden flower (tetraploid) 2	0.448
	CNS0095615	Golden flower (tetraploid) 3	0.219
CRA001975	CRR073297	Stem 1	4.264
	CRR073298	Stem 2	2.894
	CRR073299	Stem 3	4.009
	CRR073300	Leaf 1	1.767
	CRR073301	Leaf 2	1.468
	CRR073302	Leaf 3	1.161
	CRR073303	Juvenile bud 1	1.015
	CRR073304	Juvenile bud 2	1.118
	CRR073305	Juvenile bud 3	0.599
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.206
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.301
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.105
	CRR073316	Gold flowering 2	0.315
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.267
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.140