Detail information of GWHGAAZE012450


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007045366.10Indeterminate(ID)-domain 5, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8GYC1|IDD4_ARATH6E-127Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor)
trEMBLtr|A0A061E9C5|A0A061E9C5_THECC0Indeterminate(ID)-domain 5, putative isoform 1 {ECO:0000313|EMBL:EOY01198.1}
TAIR10AT2G02070.18E-85indeterminate(ID)-domain 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8563820285641407+
GWHAAZE00000003mRNA8563820285641407+
GWHAAZE00000003exon8563820285638620+
GWHAAZE00000003exon8564022585641407+
GWHAAZE00000003CDS8563820285638620+
GWHAAZE00000003CDS8564022585641407+
Transcript Sequence

Network for GWHGAAZE012450

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.27zf-C2H227490.0097
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE012450.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.860
SRR3591706second leaf21.204
SRR3591707mature leaf32.660
SRR3591708Shoot apex18.444
SRR3591709Stem4.475
SRR3591710White floral bud11.634
SRR3591711White flower9.914
SRR3591712Green floral bud11.898
SRR3591713Yellow flower5.262
SRP173429 SRR8316895Juvenile bud stage 7.460
SRR8316896Juvenile bud stage 6.529
SRR8316897Juvenile bud stage 2.891
SRR8316894Third green stage 6.036
SRR8316900Third green stage 13.053
SRR8316901Third green stage 11.237
SRR8316898Complete white stage 4.090
SRR8316899Complete white stage 25.208
SRR8316903Complete white stage 9.427
SRR8316902Silver flowering stage4.247
SRR8316904Silver flowering stage5.234
SRR8316905Silver flowering stage2.254
SRR8316906Gold flowering stage 9.283
SRR8316907Gold flowering stage 8.037
SRR8316908Gold flowering stage 9.005
SRP132670SRR6706286Control19.146
SRR6706287Light intensity 50%18.862
SRR6706288Light intensity 20%19.174
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.166
CNS0095593Slightly white alabastrum(diploid) 28.534
CNS0095594Slightly white alabastrum(diploid) 38.881
CNS0095595Whole white alabastrum(diploid) 29.292
CNS0095596Whole white alabastrum(diploid) 38.394
CNS0095597Whole white alabastrum(diploid) 410.676
CNS0095598Silvery flower (diploied) 117.111
CNS0095599Silvery flower (diploied) 29.531
CNS0095600Silvery flower (diploied) 313.466
CNS0095601Golden flower (diploid) 114.073
CNS0095602Golden flower (diploid) 215.216
CNS0095603Golden flower (diploid) 314.353
CNS0095604Slightly white alabastrum(tetraploid) 112.389
CNS0095605Slightly white alabastrum(tetraploid) 210.430
CNS0095606Slightly white alabastrum(tetraploid) 319.276
CNS0095607Whole white alabastrum(tetraploid) 17.764
CNS0095608Whole white alabastrum(tetraploid) 27.674
CNS0095609Whole white alabastrum(tetraploid) 311.171
CNS0095610Silvery flower (tetraploid) 16.460
CNS0095611Silvery flower (tetraploid) 210.303
CNS0095612Silvery flower (tetraploid) 35.790
CNS0095613Golden flower (tetraploid) 13.472
CNS0095614Golden flower (tetraploid) 23.918
CNS0095615Golden flower (tetraploid) 34.151
CRA001975CRR073297Stem 123.448
CRR073298Stem 218.179
CRR073299Stem 315.048
CRR073300Leaf 120.144
CRR073301Leaf 221.900
CRR073302Leaf 313.010
CRR073303Juvenile bud 114.442
CRR073304Juvenile bud 27.167
CRR073305Juvenile bud 318.884
CRR073306Third green 13.574
CRR073307Third green 23.051
CRR073308Third green 33.393
CRR073309Second white 12.282
CRR073310Second white 23.292
CRR073311Second white 32.137
CRR073312Silver flowering 12.369
CRR073313Silver flowering 23.241
CRR073314Silver flowering 31.026
CRR073315Gold flowering 130.460
CRR073316Gold flowering 240.709
CRR073317Gold flowering 339.158
CRR073318Tawny withering 14.024
CRR073319Tawny withering 22.518
CRR073320Tawny withering 30.585