Gene detail

Detail information of GWHGAAZE012451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011021686.1	1.896E-154	PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
Swissprot	tr\|Q9ZUL3\|IDD5_ARATH	1E-111	Protein indeterminate-domain 5, chloroplastic {ECO:0000303\|PubMed:16784536} (Precursor)
trEMBL	tr\|U5G1I0\|U5G1I0_POPTR	1E-152	Uncharacterized protein {ECO:0000313\|EMBL:ERP56219.1}
TAIR10	AT2G02070.1	1E-82	indeterminate(ID)-domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85648172	85650854	-
GWHAAZE00000003	mRNA	85648172	85650854	-
GWHAAZE00000003	exon	85650499	85650854	-
GWHAAZE00000003	exon	85648172	85649210	-
GWHAAZE00000003	CDS	85650499	85650854	-
GWHAAZE00000003	CDS	85648172	85649210	-

Transcript Sequence
>GWHTAAZE012465 ATGGCAACAAACAGATTCGTGTGCGAGGTTTGCCACAAAGGGTTCCAAAGGGAGCAAAACCTACAACTCCACAGAAGAGGACACAATTTGCCCTGGAAGCTAAAGCAAAAGACTACAAAAGAGGTGAAGAGGAAGGTCTATCTTTGTCCTGAGCCCTCTTGCGTCCACCATGACCCGTCTAGGGCTCTGGGTGACCTCACCGGTATTAAAAAGCACTTCTCTAGAAAGCATGGCGAGAAGAAGTATAAGTGCGTGAAGTGCTCTAAGAAATACGCGGTTCAGTCGGACTGGAAAGCCCACTCTAAGACTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACCGTTTTCTCCAGGCGCGACAGTTTCATCACTCATAGAGCCTTCTGCGATGCACTGGCTAAAGAGACTGCAAGAGTTCCACCCGCCATGACCACCATTGGAACCCATATGTACGATACTAGCTATAATGACGTGAGCTTAGGCTTATCCAAAATGTCTTCTCAAATCTCTGAGGTCCAAGACGACAAACCACCTCTAACCGACATATTAGGCCTTGGAAAAGCTCCGATCCCACAATTCACAAACCTCCTTGGCCAATCCATTGGATCCGCATTCCGCCCCCCACAAACCATGCCTAATTCACCACCATTCTTCATGCAAGAACAACACCAAGGGTTCCCCGAAGATAACCAATCAGGATTAGGCCTATTTCCGACCCCAAAATTCAATGGTTTATTGCAAAATTATGCGGACAATAATCAAAACAGTGAACCCAATCCCCAAATTGCTCCCGATCTCTTCAATCTTGGGTTTTATTCACATGGAAGCAACACTAATGGCATTGAAACTTCATCAAACCTATTCTCAAGTGATCACAATATTAGCACTTCTAGTGTCCACTCTCTATATGGCACATCTATTCAGCCCCTCAATGTTGGCCCACACATGTCAGCGACCGCACTCCTCCAAAAGGCAGCCCAACTGGGGTCCACGTCGAGCAACAGCAATGCCAGCTCGTTTCTTAGGACCTTGGGGAGCTCTTCGTCGTCAAGTGGCACGAAGTTCGATAACAATTTAAATGAGCTAATGAACTCTCTTGCTGGTGGTGGTAGGTCCTCAATATTTGGAGGAATGGGGGGCTATTGTGGAAATGAGAATGAGAAGAACTACGGGGGGTATAACGGAAAGAAAATTTTGGGACTTGAAGAGACAACAAATGGGCTAAGTTTTGGAGATCTGATGAGGGAAGGTGTTAGTGGAGGAAGGGCTGAGAATCTGACAAGAGATTTTCTTGGGGTTGGTGAAATGGTGAGAAGCATGAGCTCATTGGATTCAGAGACAAAGGCTGCGCCGACAAGCCATGCTAAATTTGGAGGTGGAAGTTTTCAGTGA

Network for GWHGAAZE012451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	6	28	0.004

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.420
	SRR3591706	second leaf	2.911
	SRR3591707	mature leaf	13.641
	SRR3591708	Shoot apex	3.056
	SRR3591709	Stem	3.569
	SRR3591710	White floral bud	3.418
	SRR3591711	White flower	3.843
	SRR3591712	Green floral bud	4.382
	SRR3591713	Yellow flower	3.622
SRP173429	SRR8316895	Juvenile bud stage	2.660
	SRR8316896	Juvenile bud stage	2.890
	SRR8316897	Juvenile bud stage	1.936
	SRR8316894	Third green stage	1.419
	SRR8316900	Third green stage	3.051
	SRR8316901	Third green stage	2.191
	SRR8316898	Complete white stage	2.140
	SRR8316899	Complete white stage	7.562
	SRR8316903	Complete white stage	3.262
	SRR8316902	Silver flowering stage	0.633
	SRR8316904	Silver flowering stage	1.424
	SRR8316905	Silver flowering stage	0.523
	SRR8316906	Gold flowering stage	1.306
	SRR8316907	Gold flowering stage	1.707
	SRR8316908	Gold flowering stage	2.761
SRP132670	SRR6706286	Control	7.494
	SRR6706287	Light intensity 50%	6.173
	SRR6706288	Light intensity 20%	7.215
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.998
	CNS0095593	Slightly white alabastrum(diploid) 2	2.576
	CNS0095594	Slightly white alabastrum(diploid) 3	3.734
	CNS0095595	Whole white alabastrum(diploid) 2	1.821
	CNS0095596	Whole white alabastrum(diploid) 3	2.363
	CNS0095597	Whole white alabastrum(diploid) 4	3.128
	CNS0095598	Silvery flower (diploied) 1	1.954
	CNS0095599	Silvery flower (diploied) 2	1.234
	CNS0095600	Silvery flower (diploied) 3	5.251
	CNS0095601	Golden flower (diploid) 1	1.972
	CNS0095602	Golden flower (diploid) 2	4.808
	CNS0095603	Golden flower (diploid) 3	4.736
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.775
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.832
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.695
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.864
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.960
	CNS0095610	Silvery flower (tetraploid) 1	2.371
	CNS0095611	Silvery flower (tetraploid) 2	4.212
	CNS0095612	Silvery flower (tetraploid) 3	3.029
	CNS0095613	Golden flower (tetraploid) 1	1.545
	CNS0095614	Golden flower (tetraploid) 2	0.829
	CNS0095615	Golden flower (tetraploid) 3	1.601
CRA001975	CRR073297	Stem 1	4.737
	CRR073298	Stem 2	4.614
	CRR073299	Stem 3	3.742
	CRR073300	Leaf 1	5.898
	CRR073301	Leaf 2	7.076
	CRR073302	Leaf 3	3.228
	CRR073303	Juvenile bud 1	4.827
	CRR073304	Juvenile bud 2	1.673
	CRR073305	Juvenile bud 3	8.143
	CRR073306	Third green 1	1.223
	CRR073307	Third green 2	0.809
	CRR073308	Third green 3	1.558
	CRR073309	Second white 1	0.362
	CRR073310	Second white 2	0.573
	CRR073311	Second white 3	0.879
	CRR073312	Silver flowering 1	0.610
	CRR073313	Silver flowering 2	1.033
	CRR073314	Silver flowering 3	1.309
	CRR073315	Gold flowering 1	5.377
	CRR073316	Gold flowering 2	8.349
	CRR073317	Gold flowering 3	3.560
	CRR073318	Tawny withering 1	3.237
	CRR073319	Tawny withering 2	2.535
	CRR073320	Tawny withering 3	3.158