Gene detail

Detail information of GWHGAAZE012457

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010043906.1	2.7149E-143	PREDICTED: D-galacturonate reductase-like [Eucalyptus grandis]
Swissprot	tr\|O49133\|GALUR_FRAAN	4E-130	D-galacturonate reductase
trEMBL	tr\|A0A059D6B8\|A0A059D6B8_EUCGR	1E-143	Uncharacterized protein {ECO:0000313\|EMBL:KCW85926.1}
TAIR10	AT1G59960.1	1E-70	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85873124	85875522	+
GWHAAZE00000003	mRNA	85873124	85875522	+
GWHAAZE00000003	exon	85873124	85873437	+
GWHAAZE00000003	exon	85874124	85874174	+
GWHAAZE00000003	exon	85874261	85874366	+
GWHAAZE00000003	exon	85874919	85875098	+
GWHAAZE00000003	exon	85875310	85875522	+
GWHAAZE00000003	CDS	85873124	85873437	+
GWHAAZE00000003	CDS	85874124	85874174	+
GWHAAZE00000003	CDS	85874261	85874366	+
GWHAAZE00000003	CDS	85874919	85875098	+
GWHAAZE00000003	CDS	85875310	85875522	+

Transcript Sequence
>GWHTAAZE012471 ATGACTAGGATACCAGAGGTAACAGTGGGTACATGCGAGAAGGCCATGCCGGTGATCGGAATGGGTACGTGCTCGGATCCTCCGGCGGATCTGGAAACCACAGTAGAGGCGCTTCTGGAAGCCATAAAAACAGGGTACCGCCACTTCGACACGGCCTTCGCCTACGGATCAGAGAAGCCACTGGGTATAGCCATAGCTAAAGCTCTAGAGCTAGGCCTAATTAAATCACGTCATGAACTCTTCATCACCACCAAGCTGTTTGCTTGCTTTGCGGAGAGGGATCAAGTTGTTCCTGCTATTAAAATGAGCCTTCAGAACCTTCAACTGGAGTATGTAGACATGTATTTAATACACTGGCCCCTGAGAGTGCCAGAATCTTGGACTCACCAAGGGCATTGGCGTCAGCAATTTCTCTTCAAGAGAATTGAGGACCTCCTCTCTATTGCCAACATCCCACCTGCTATTAATCAAGTGGAGATGAACCCAGTTTGGCAGCAAAAGCAACTGAGGGAGTTCTGCAAGGCAAAGGGTATTCATGTGACTGCATACTCACCTTTGGGGGCCAATGGTACTAAATGGGGAGACAATAGAATTATGGAGTGTGATGTACTAAAGGAGATTGCCAAGGCCAAAGGCAAATCCACTGCTCAGATTTCTTTAAGGTGGGTGTATGAGCAAGGGGCTAGTTTGGTAGCAAAGAGCTACAACAAGAATTGGATGAGGGAAAACCTTGATATATTTGATTTTTCACTCACAGAGGAAGAGTCCTACAAGATCTCACAGCTTCCTCAGCGCAAAGGGGTCACTTTTGAGCCAGTTTTGGGAGCTCATCCTCTGGTTCTGGAGATTGACGCAGAGATCTAA

Network for GWHGAAZE012457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	19	120	1.20E-15
PF00248.22	Aldo_ket_red	141	261	1.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19642	GALUR	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.416
	SRR3591706	second leaf	51.895
	SRR3591707	mature leaf	52.892
	SRR3591708	Shoot apex	73.681
	SRR3591709	Stem	87.625
	SRR3591710	White floral bud	25.710
	SRR3591711	White flower	38.253
	SRR3591712	Green floral bud	38.539
	SRR3591713	Yellow flower	18.229
SRP173429	SRR8316895	Juvenile bud stage	54.768
	SRR8316896	Juvenile bud stage	69.047
	SRR8316897	Juvenile bud stage	15.879
	SRR8316894	Third green stage	27.883
	SRR8316900	Third green stage	72.448
	SRR8316901	Third green stage	70.037
	SRR8316898	Complete white stage	32.056
	SRR8316899	Complete white stage	135.774
	SRR8316903	Complete white stage	44.310
	SRR8316902	Silver flowering stage	17.293
	SRR8316904	Silver flowering stage	17.963
	SRR8316905	Silver flowering stage	10.299
	SRR8316906	Gold flowering stage	51.681
	SRR8316907	Gold flowering stage	39.367
	SRR8316908	Gold flowering stage	39.402
SRP132670	SRR6706286	Control	173.625
	SRR6706287	Light intensity 50%	135.313
	SRR6706288	Light intensity 20%	136.631
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.199
	CNS0095593	Slightly white alabastrum(diploid) 2	66.919
	CNS0095594	Slightly white alabastrum(diploid) 3	61.804
	CNS0095595	Whole white alabastrum(diploid) 2	50.983
	CNS0095596	Whole white alabastrum(diploid) 3	41.784
	CNS0095597	Whole white alabastrum(diploid) 4	43.390
	CNS0095598	Silvery flower (diploied) 1	51.236
	CNS0095599	Silvery flower (diploied) 2	46.914
	CNS0095600	Silvery flower (diploied) 3	47.590
	CNS0095601	Golden flower (diploid) 1	61.229
	CNS0095602	Golden flower (diploid) 2	61.809
	CNS0095603	Golden flower (diploid) 3	59.967
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.873
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.811
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.662
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.833
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.167
	CNS0095610	Silvery flower (tetraploid) 1	30.005
	CNS0095611	Silvery flower (tetraploid) 2	29.027
	CNS0095612	Silvery flower (tetraploid) 3	16.159
	CNS0095613	Golden flower (tetraploid) 1	16.821
	CNS0095614	Golden flower (tetraploid) 2	29.050
	CNS0095615	Golden flower (tetraploid) 3	4.434
CRA001975	CRR073297	Stem 1	64.333
	CRR073298	Stem 2	73.005
	CRR073299	Stem 3	94.254
	CRR073300	Leaf 1	70.642
	CRR073301	Leaf 2	74.370
	CRR073302	Leaf 3	90.506
	CRR073303	Juvenile bud 1	103.852
	CRR073304	Juvenile bud 2	77.797
	CRR073305	Juvenile bud 3	122.720
	CRR073306	Third green 1	28.063
	CRR073307	Third green 2	36.977
	CRR073308	Third green 3	22.574
	CRR073309	Second white 1	13.131
	CRR073310	Second white 2	7.465
	CRR073311	Second white 3	5.099
	CRR073312	Silver flowering 1	16.665
	CRR073313	Silver flowering 2	14.980
	CRR073314	Silver flowering 3	13.653
	CRR073315	Gold flowering 1	69.775
	CRR073316	Gold flowering 2	62.146
	CRR073317	Gold flowering 3	71.438
	CRR073318	Tawny withering 1	126.970
	CRR073319	Tawny withering 2	115.661
	CRR073320	Tawny withering 3	69.470