Gene detail

Detail information of GWHGAAZE012459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002311555.1	1.7164E-158	zinc finger family protein [Populus trichocarpa]
Swissprot	tr\|Q9C9X7\|IDD14_ARATH	1E-131	Protein indeterminate-domain 14 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|B9HJL4\|B9HJL4_POPTR	6E-159	Zinc finger family protein {ECO:0000313\|EMBL:EEE88922.1}
TAIR10	AT1G68130.1	1E-106	indeterminate(ID)-domain 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85910942	85912826	-
GWHAAZE00000003	mRNA	85910942	85912826	-
GWHAAZE00000003	exon	85912375	85912826	-
GWHAAZE00000003	exon	85910942	85911515	-
GWHAAZE00000003	CDS	85912375	85912826	-
GWHAAZE00000003	CDS	85910942	85911515	-

Transcript Sequence
>GWHTAAZE012473 ATGTACTGCTTTGCTAAGAGTTTCACTTTCACGATACGTAATTTTTTGACAGATCCAGATGCCGAGGTGGTATCACTCTCCCCAAAGACGCTACTGGAATCGGACAGATACGTATGCGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATTTGCAGATGCACCGGAGGCGGCACAAGGTGCCTTGGAAGCTGTTGAAGAGGGAATCACCGGAGGTGAGAAAGAGAGTGTTTGTTTGCCCGGAGCCGACGTGCTTGCATCATAACCCTTGCCATGCTCTAGGGGACCTTGTTGGGATAAAGAAGCATTTTAGGAGGAAACATAGCAACAACAAGCAGTGGGTTTGTGAGAAATGCTCAAAAGGGTATGCTGTTCAGTCTGATTATAAGGCCCATCTCAAGACTTGTGGTACCCGTGGTCATTCTTGTGACTGTGGTCGTGTTTTTTCCAGAGTTGAGAGTTTCATTGAGCACCAAGACACCTGCACTCTGCCGCCACACGGCCTCCCCAAGCTGCCAGCCCTACAACCAACCACCGTCTGCTCTTCCAGCAGCCCTTCAAGCGAAACAAATAATATTAATCCACTTATCGCCAATCGAATGCCAAGTTTTGCTACTGATTATGAGCAACATAATCTGGAACTTCAGTTACAACCAACATCAAACACCTACTGTGCATTATCTCTATCAGATTTGAAGCTCTCGATAGGAAGGGAAGTGGAAAATGAGGAGCTGAAGTTGGCGATGGCCGAGAGGGCTAATGCCGAGGAGGTGAGGGAACAAGCGAAGAGGCAGATTGCGATGGCAGAATTGGAATACGCGAATGCAAAGAGGATCAGGGAACAGGCGAGGGCCGAGCTGGAGAAGGCTCAAATGATGAGGGAGGAAGCTAAGAGGAAGATGGATTCAGCTATTTTGGACATCACTTGCCGGGCTTGTAAGCAGCATTTGAGAGCCGGTTTGGATCGGGGGTTGTTTGCGATGAGTTACTTCTCATCGGGAATAACAGAAGGGGAGGGACAGTGA

Network for GWHGAAZE012459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	37	59	0.003

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.891
	SRR3591706	second leaf	12.782
	SRR3591707	mature leaf	11.303
	SRR3591708	Shoot apex	19.389
	SRR3591709	Stem	12.959
	SRR3591710	White floral bud	12.105
	SRR3591711	White flower	4.218
	SRR3591712	Green floral bud	8.481
	SRR3591713	Yellow flower	1.074
SRP173429	SRR8316895	Juvenile bud stage	3.724
	SRR8316896	Juvenile bud stage	3.248
	SRR8316897	Juvenile bud stage	1.663
	SRR8316894	Third green stage	2.655
	SRR8316900	Third green stage	6.692
	SRR8316901	Third green stage	7.399
	SRR8316898	Complete white stage	7.082
	SRR8316899	Complete white stage	13.822
	SRR8316903	Complete white stage	11.086
	SRR8316902	Silver flowering stage	1.926
	SRR8316904	Silver flowering stage	3.559
	SRR8316905	Silver flowering stage	2.660
	SRR8316906	Gold flowering stage	1.157
	SRR8316907	Gold flowering stage	1.574
	SRR8316908	Gold flowering stage	1.912
SRP132670	SRR6706286	Control	11.440
	SRR6706287	Light intensity 50%	10.349
	SRR6706288	Light intensity 20%	9.280
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.534
	CNS0095593	Slightly white alabastrum(diploid) 2	7.998
	CNS0095594	Slightly white alabastrum(diploid) 3	4.875
	CNS0095595	Whole white alabastrum(diploid) 2	3.653
	CNS0095596	Whole white alabastrum(diploid) 3	7.027
	CNS0095597	Whole white alabastrum(diploid) 4	4.517
	CNS0095598	Silvery flower (diploied) 1	6.139
	CNS0095599	Silvery flower (diploied) 2	4.730
	CNS0095600	Silvery flower (diploied) 3	4.376
	CNS0095601	Golden flower (diploid) 1	1.947
	CNS0095602	Golden flower (diploid) 2	3.132
	CNS0095603	Golden flower (diploid) 3	4.153
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.110
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.002
	CNS0095610	Silvery flower (tetraploid) 1	2.730
	CNS0095611	Silvery flower (tetraploid) 2	3.694
	CNS0095612	Silvery flower (tetraploid) 3	5.128
	CNS0095613	Golden flower (tetraploid) 1	1.572
	CNS0095614	Golden flower (tetraploid) 2	1.248
	CNS0095615	Golden flower (tetraploid) 3	0.562
CRA001975	CRR073297	Stem 1	10.499
	CRR073298	Stem 2	9.906
	CRR073299	Stem 3	11.629
	CRR073300	Leaf 1	14.105
	CRR073301	Leaf 2	11.829
	CRR073302	Leaf 3	8.706
	CRR073303	Juvenile bud 1	13.570
	CRR073304	Juvenile bud 2	10.732
	CRR073305	Juvenile bud 3	15.529
	CRR073306	Third green 1	17.401
	CRR073307	Third green 2	25.759
	CRR073308	Third green 3	23.128
	CRR073309	Second white 1	3.785
	CRR073310	Second white 2	2.689
	CRR073311	Second white 3	1.649
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	1.002
	CRR073314	Silver flowering 3	1.823
	CRR073315	Gold flowering 1	5.037
	CRR073316	Gold flowering 2	8.072
	CRR073317	Gold flowering 3	9.563
	CRR073318	Tawny withering 1	2.889
	CRR073319	Tawny withering 2	2.304
	CRR073320	Tawny withering 3	3.721