Detail information of GWHGAAZE012477


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649318.10PREDICTED: THO complex subunit 2 [Vitis vinifera]
Swissprottr|F4IAT2|THOC2_ARATH0THO complex subunit 2
trEMBLtr|A0A067F0B6|A0A067F0B6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO60824.1}
TAIR10AT1G24706.10THO2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8621162186226944-
GWHAAZE00000003mRNA8621162186226944-
GWHAAZE00000003exon8622688686226944-
GWHAAZE00000003exon8622653086226716-
GWHAAZE00000003exon8622592986226171-
GWHAAZE00000003exon8622575486225834-
GWHAAZE00000003exon8622553586225654-
GWHAAZE00000003exon8622534386225402-
GWHAAZE00000003exon8622423886224365-
GWHAAZE00000003exon8622090286220998-
GWHAAZE00000003exon8622068786220815-
GWHAAZE00000003exon8621964386219746-
GWHAAZE00000003exon8621899186219171-
GWHAAZE00000003exon8621861086218791-
GWHAAZE00000003exon8621757086218176-
GWHAAZE00000003exon8621708686217190-
GWHAAZE00000003exon8621677086216925-
GWHAAZE00000003exon8621659586216675-
GWHAAZE00000003exon8621601386216474-
GWHAAZE00000003exon8621330986214427-
GWHAAZE00000003exon8621216686212464-
GWHAAZE00000003exon8621162186211690-
GWHAAZE00000003five_prime_UTR8622688686226944-
GWHAAZE00000003five_prime_UTR8622671686226716-
GWHAAZE00000003CDS8622653086226715-
GWHAAZE00000003CDS8622592986226171-
GWHAAZE00000003CDS8622575486225834-
GWHAAZE00000003CDS8622553586225654-
GWHAAZE00000003CDS8622534386225402-
GWHAAZE00000003CDS8622423886224365-
GWHAAZE00000003CDS8622090286220998-
GWHAAZE00000003CDS8622068786220815-
GWHAAZE00000003CDS8621964386219746-
GWHAAZE00000003CDS8621899186219171-
GWHAAZE00000003CDS8621861086218791-
GWHAAZE00000003CDS8621757086218176-
GWHAAZE00000003CDS8621708686217190-
GWHAAZE00000003CDS8621677086216925-
GWHAAZE00000003CDS8621659586216675-
GWHAAZE00000003CDS8621601386216474-
GWHAAZE00000003CDS8621330986214427-
GWHAAZE00000003CDS8621216686212464-
GWHAAZE00000003CDS8621162186211690-
Transcript Sequence

Network for GWHGAAZE012477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16134.6THOC2_N371901.80E-21
PF11732.9Thoc21922677.80E-29
PF11262.9Tho25218155.10E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12879THOC2 Spliceosome map03040
RNA transportmap03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.507
SRR3591706second leaf10.617
SRR3591707mature leaf13.399
SRR3591708Shoot apex16.313
SRR3591709Stem17.034
SRR3591710White floral bud14.847
SRR3591711White flower18.417
SRR3591712Green floral bud13.054
SRR3591713Yellow flower14.689
SRP173429 SRR8316895Juvenile bud stage 9.792
SRR8316896Juvenile bud stage 15.421
SRR8316897Juvenile bud stage 6.588
SRR8316894Third green stage 6.380
SRR8316900Third green stage 12.609
SRR8316901Third green stage 13.193
SRR8316898Complete white stage 3.545
SRR8316899Complete white stage 13.989
SRR8316903Complete white stage 10.470
SRR8316902Silver flowering stage6.550
SRR8316904Silver flowering stage9.984
SRR8316905Silver flowering stage4.958
SRR8316906Gold flowering stage 15.969
SRR8316907Gold flowering stage 14.987
SRR8316908Gold flowering stage 15.861
SRP132670SRR6706286Control10.213
SRR6706287Light intensity 50%10.720
SRR6706288Light intensity 20%11.778
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.598
CNS0095593Slightly white alabastrum(diploid) 27.313
CNS0095594Slightly white alabastrum(diploid) 35.497
CNS0095595Whole white alabastrum(diploid) 25.346
CNS0095596Whole white alabastrum(diploid) 33.979
CNS0095597Whole white alabastrum(diploid) 45.503
CNS0095598Silvery flower (diploied) 113.965
CNS0095599Silvery flower (diploied) 210.010
CNS0095600Silvery flower (diploied) 315.702
CNS0095601Golden flower (diploid) 110.880
CNS0095602Golden flower (diploid) 216.700
CNS0095603Golden flower (diploid) 316.653
CNS0095604Slightly white alabastrum(tetraploid) 18.212
CNS0095605Slightly white alabastrum(tetraploid) 26.450
CNS0095606Slightly white alabastrum(tetraploid) 317.660
CNS0095607Whole white alabastrum(tetraploid) 15.289
CNS0095608Whole white alabastrum(tetraploid) 23.620
CNS0095609Whole white alabastrum(tetraploid) 311.095
CNS0095610Silvery flower (tetraploid) 117.447
CNS0095611Silvery flower (tetraploid) 218.736
CNS0095612Silvery flower (tetraploid) 317.770
CNS0095613Golden flower (tetraploid) 19.514
CNS0095614Golden flower (tetraploid) 215.313
CNS0095615Golden flower (tetraploid) 320.037
CRA001975CRR073297Stem 121.581
CRR073298Stem 219.912
CRR073299Stem 314.192
CRR073300Leaf 119.142
CRR073301Leaf 218.119
CRR073302Leaf 310.523
CRR073303Juvenile bud 19.974
CRR073304Juvenile bud 25.621
CRR073305Juvenile bud 318.301
CRR073306Third green 15.224
CRR073307Third green 23.749
CRR073308Third green 35.736
CRR073309Second white 13.763
CRR073310Second white 28.481
CRR073311Second white 312.558
CRR073312Silver flowering 18.270
CRR073313Silver flowering 28.816
CRR073314Silver flowering 36.475
CRR073315Gold flowering 15.392
CRR073316Gold flowering 210.674
CRR073317Gold flowering 35.020
CRR073318Tawny withering 111.581
CRR073319Tawny withering 28.986
CRR073320Tawny withering 310.527