Detail information of GWHGAAZE012478


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649318.10PREDICTED: THO complex subunit 2 [Vitis vinifera]
Swissprottr|F4IAT2|THOC2_ARATH0THO complex subunit 2
trEMBLtr|F6HFB6|F6HFB6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50765.1}
TAIR10AT1G24706.22E-162THO2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8622727686234873-
GWHAAZE00000003mRNA8622727686234873-
GWHAAZE00000003exon8623453286234873-
GWHAAZE00000003exon8623430886234433-
GWHAAZE00000003exon8623209786232138-
GWHAAZE00000003exon8623118686231245-
GWHAAZE00000003exon8623103186231093-
GWHAAZE00000003exon8623059086230670-
GWHAAZE00000003exon8622961686229687-
GWHAAZE00000003exon8622949286229539-
GWHAAZE00000003exon8622931586229383-
GWHAAZE00000003exon8622905286229185-
GWHAAZE00000003exon8622790486227979-
GWHAAZE00000003exon8622727686227521-
GWHAAZE00000003five_prime_UTR8623467086234873-
GWHAAZE00000003CDS8623453286234669-
GWHAAZE00000003CDS8623430886234433-
GWHAAZE00000003CDS8623209786232138-
GWHAAZE00000003CDS8623118686231245-
GWHAAZE00000003CDS8623103186231093-
GWHAAZE00000003CDS8623059086230670-
GWHAAZE00000003CDS8622961686229687-
GWHAAZE00000003CDS8622949286229539-
GWHAAZE00000003CDS8622931586229383-
GWHAAZE00000003CDS8622905286229185-
GWHAAZE00000003CDS8622790486227979-
GWHAAZE00000003CDS8622727686227521-
Transcript Sequence

Network for GWHGAAZE012478

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16134.6THOC2_N353657.10E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12879THOC2 Spliceosome map03040
RNA transportmap03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.940
SRR3591706second leaf7.385
SRR3591707mature leaf10.522
SRR3591708Shoot apex8.822
SRR3591709Stem9.530
SRR3591710White floral bud11.258
SRR3591711White flower13.097
SRR3591712Green floral bud5.927
SRR3591713Yellow flower8.398
SRP173429 SRR8316895Juvenile bud stage 5.425
SRR8316896Juvenile bud stage 6.440
SRR8316897Juvenile bud stage 3.634
SRR8316894Third green stage 4.177
SRR8316900Third green stage 9.574
SRR8316901Third green stage 6.606
SRR8316898Complete white stage 2.360
SRR8316899Complete white stage 8.590
SRR8316903Complete white stage 8.526
SRR8316902Silver flowering stage3.502
SRR8316904Silver flowering stage7.946
SRR8316905Silver flowering stage2.809
SRR8316906Gold flowering stage 9.290
SRR8316907Gold flowering stage 8.578
SRR8316908Gold flowering stage 9.417
SRP132670SRR6706286Control5.076
SRR6706287Light intensity 50%6.336
SRR6706288Light intensity 20%8.294
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.492
CNS0095593Slightly white alabastrum(diploid) 21.217
CNS0095594Slightly white alabastrum(diploid) 30.877
CNS0095595Whole white alabastrum(diploid) 22.620
CNS0095596Whole white alabastrum(diploid) 31.048
CNS0095597Whole white alabastrum(diploid) 41.771
CNS0095598Silvery flower (diploied) 16.097
CNS0095599Silvery flower (diploied) 24.134
CNS0095600Silvery flower (diploied) 312.428
CNS0095601Golden flower (diploid) 13.714
CNS0095602Golden flower (diploid) 214.805
CNS0095603Golden flower (diploid) 313.077
CNS0095604Slightly white alabastrum(tetraploid) 11.891
CNS0095605Slightly white alabastrum(tetraploid) 22.113
CNS0095606Slightly white alabastrum(tetraploid) 311.718
CNS0095607Whole white alabastrum(tetraploid) 11.165
CNS0095608Whole white alabastrum(tetraploid) 20.910
CNS0095609Whole white alabastrum(tetraploid) 37.101
CNS0095610Silvery flower (tetraploid) 19.685
CNS0095611Silvery flower (tetraploid) 213.439
CNS0095612Silvery flower (tetraploid) 310.616
CNS0095613Golden flower (tetraploid) 12.691
CNS0095614Golden flower (tetraploid) 26.711
CNS0095615Golden flower (tetraploid) 315.137
CRA001975CRR073297Stem 17.235
CRR073298Stem 25.736
CRR073299Stem 34.422
CRR073300Leaf 15.492
CRR073301Leaf 23.190
CRR073302Leaf 34.004
CRR073303Juvenile bud 11.523
CRR073304Juvenile bud 21.623
CRR073305Juvenile bud 34.022
CRR073306Third green 11.076
CRR073307Third green 20.412
CRR073308Third green 31.290
CRR073309Second white 11.985
CRR073310Second white 23.614
CRR073311Second white 34.083
CRR073312Silver flowering 12.672
CRR073313Silver flowering 24.755
CRR073314Silver flowering 32.413
CRR073315Gold flowering 11.278
CRR073316Gold flowering 23.078
CRR073317Gold flowering 31.316
CRR073318Tawny withering 11.453
CRR073319Tawny withering 21.588
CRR073320Tawny withering 31.180