Gene detail

Detail information of GWHGAAZE012480

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004236465.1	0	PREDICTED: PHD finger protein At2g01810-like [Solanum lycopersicum]
Swissprot	tr\|Q7X6Y7\|MMD1_ARATH	2E-107	PHD finger protein MALE MEIOCYTE DEATH 1
trEMBL	tr\|M0ZIU2\|M0ZIU2_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400001631}
TAIR10	AT1G66170.1	2E-95	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86283694	86286203	-
GWHAAZE00000003	mRNA	86283694	86286203	-
GWHAAZE00000003	exon	86283694	86285395	-
GWHAAZE00000003	exon	86285510	86285747	-
GWHAAZE00000003	exon	86285846	86286203	-
GWHAAZE00000003	CDS	86285846	86286203	-
GWHAAZE00000003	CDS	86285510	86285747	-
GWHAAZE00000003	CDS	86283694	86285395	-

Transcript Sequence
>GWHTAAZE012494 ATGGCGACAATTTTCGAGTGGTGTAAGAGCAGAAAGAGAAAAACTAATTTATCTGGATTCCAAAGCTTATCTACTAGCGGTGTAATGATCGATTTAGACGGTCCTTTTAGAGACAACATTCGATCGTTTCTCCAAGAATATGGCAAAATTGAGGATCACTTTAACGGAATGCCTGCCTGGTCTACTCTCCTCGTTAGCCACACCAACGGCGTCGTTTTCCCTCTCTACATTATCCAAGAAACTGTTCAACACTCTTTAAACCCTTTCTGTGATCACTGTAAATGCATTGGTAATTTATATATATATATATGAATTTGCCCTATATATATATATATATATAATAATAATATGTGCAATTGGTGGAGTCACCATTTTGTATCGAAGAGAAAGTATCATATGATAATTCCGGCCAATCGGAATAAGCAATTGAAGGGGAACTATTTGAAGCGTAGTGATCATTTACTACACGGATTGATTCATTGTAATGGATTTGGTCATCTTCTATGCGTCAATGCACGCATAGATGATTCTAATTATGTTAGTGGGAGCGATATTATGGATCTTTGGGACCGTCTCTGCACAACCCTAAGAACAAGGAAAATTTCGGTAAAGGATGTCTCGAGGAAGAAATCAACAGAGCTGAGATTGCTTCACAGTGTGGCTAATGGACAACCTTGGTTTGGAAAATGGGGCTATAATTTTTGCCGTGGAACATTTGGAGTTAACATTGAGAAATATAAGAGAGCAATTCAATTTTTGTGCACAATCGACCTAGATATGATTGTTAATGATTTCAAGAACACTGATAGAGGAAGAAAACTAGAAAGGATTATATGTAGTTACAGAGAAGTAAGCAAGACTCAATTGATCAACATTAGTGATCTGTTACAATTCATGTTTGATGTCAAGTCTGGTGCCCTGATTGAGAAGAAAAAACCTATGACAGTGACGAAATATGCCTCTTCGAAACCCTTGTCTAGAAAAAACCATCAAAATGACTCTGCGACAGTGGATAATTCAGTTGATTTGTCGACCTTTGTGAATTCACTTGCCACCAGTGATTGCAGGTGGCCTGCAAGGAGATTAAAAGATGTAGTAACAGTGATTGTAGATCTTTTGGAAGAGAACAAGGTAAGTGATAATGGAAACAGTGAAATGTCTCGGCACGAACTGCGTGAGGGGGCAAGAAATTGTATTGGGGATACGGGTCTGATTGATTTCGTACTTAAATCAATTAACTGTGTTGTTGTTGGCAGTAAAACTGTTTCTAAATCAATCAATCCATTGACCAAATTGGTTGAATTCAAAATTCATGATGTTGAAGAAGCCAAATCAGCTAAAAAGTTAAATAAATTTTCGTCTTCACTCGCTAAATTCGACTGCAGATGGCCAGAACAGAGACTAGAACATGCAGCACAAGTGGTGGTTAATATTTTGAAAGAGAACAAAGCAACGATCAATGGAAATGGCGTGATGTCAAGGCAAGAATTGCGTGATGCTGCTAGACAGCGCATTGGTGATACTGGATTGATTGATTTTGTGTTAAAATCAATCAACAATTCTGTTATTGGAGGTCAGATTGTTTGTCGATTTAAAAACCCATCAAGTAGATTGATTGAATTTTCGGTTTGTGATGAAAATGCAGTGGAGTTGCCTGCCATGGCTCTTAATCCTGTCGTGGATGTGTATGAACACATTCTGTTTTTGTATGAAAATGTTCTTTTGGGTTATCCGGAGTGGGACTCAGTGAGTTCAGAGACACAAGTTATCTTGAATAGCAAGTATTTTGTGAAGGAGTGGGTATTTAAAGATGAGGAGGAGCAGCAGCTAATGACAATAACATGCCAGGTGCTGCCTAGCTTTGACGAGATAGAAACTGAGTTGAATCGTCCATTACCACCAGGCGAGTTGGTTGTGGTGCCACCAAGCATAACAATTGGACAGCTGAAGGTGGCGGCACAGCATGCACTTCGAGACACATACTGTATAATGGACCGGTTCATTGTGACGCAGATTGGAGGGTTGAAGAGCATAGAGGACGAGAGGGTCCTTTCTTGCGCGGTTGATTCTGATGGGCATGTTTGGGTGAGAGGGTGTGGGCTGGATTTGAGTACAAAGCTGAGATACGAAGGTGGGACCGAGAATGGAAAAGTGGATTGCATGTGTGGAGCCAAGGACGATGATGGGGAAAGGATGATAGCCTGTGATGCTTGCAATGTGTGGATTCATACTAAGTGCAACGACATTGATGATGATGAACCTGCTCCTCCACTTTTCTTTTGTGTGAAGTGTATTTGA

Network for GWHGAAZE012480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	719	763	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.185
	SRR3591713	Yellow flower	0.053
SRP173429	SRR8316895	Juvenile bud stage	0.435
	SRR8316896	Juvenile bud stage	0.533
	SRR8316897	Juvenile bud stage	0.140
	SRR8316894	Third green stage	0.180
	SRR8316900	Third green stage	0.292
	SRR8316901	Third green stage	0.286
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.003
SRP132670	SRR6706286	Control	0.064
	SRR6706287	Light intensity 50%	0.187
	SRR6706288	Light intensity 20%	0.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.316
	CNS0095593	Slightly white alabastrum(diploid) 2	0.246
	CNS0095594	Slightly white alabastrum(diploid) 3	0.620
	CNS0095595	Whole white alabastrum(diploid) 2	0.113
	CNS0095596	Whole white alabastrum(diploid) 3	0.381
	CNS0095597	Whole white alabastrum(diploid) 4	0.160
	CNS0095598	Silvery flower (diploied) 1	0.039
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.031
	CNS0095601	Golden flower (diploid) 1	0.094
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.269
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.385
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.073
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.025
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.268
	CRR073298	Stem 2	0.229
	CRR073299	Stem 3	0.206
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.020
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.026
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000