Gene detail

Detail information of GWHGAAZE012489

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281257.2	PREDICTED: nuclear pore complex protein NUP155 isoform X1 [Vitis vinifera]
Swissprot	tr\|F4HXV6\|NU155_ARATH	Nuclear pore complex protein NUP155 {ECO:0000303\|PubMed:12034489}
trEMBL	tr\|F6HFD8\|F6HFD8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50787.1}
TAIR10	AT1G14850.1	nucleoporin 155

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86444118	86454606	+
GWHAAZE00000003	mRNA	86444118	86454606	+
GWHAAZE00000003	exon	86444118	86444276	+
GWHAAZE00000003	exon	86447725	86447894	+
GWHAAZE00000003	exon	86448766	86448892	+
GWHAAZE00000003	exon	86449304	86449566	+
GWHAAZE00000003	exon	86449792	86451460	+
GWHAAZE00000003	exon	86451549	86451761	+
GWHAAZE00000003	exon	86451907	86452154	+
GWHAAZE00000003	exon	86452233	86452647	+
GWHAAZE00000003	exon	86452813	86453018	+
GWHAAZE00000003	exon	86453110	86453467	+
GWHAAZE00000003	exon	86453627	86453845	+
GWHAAZE00000003	exon	86453920	86454248	+
GWHAAZE00000003	exon	86454439	86454606	+
GWHAAZE00000003	CDS	86444118	86444276	+
GWHAAZE00000003	CDS	86447725	86447894	+
GWHAAZE00000003	CDS	86448766	86448892	+
GWHAAZE00000003	CDS	86449304	86449566	+
GWHAAZE00000003	CDS	86449792	86451460	+
GWHAAZE00000003	CDS	86451549	86451761	+
GWHAAZE00000003	CDS	86451907	86452154	+
GWHAAZE00000003	CDS	86452233	86452647	+
GWHAAZE00000003	CDS	86452813	86453018	+
GWHAAZE00000003	CDS	86453110	86453467	+
GWHAAZE00000003	CDS	86453627	86453845	+
GWHAAZE00000003	CDS	86453920	86454248	+
GWHAAZE00000003	CDS	86454439	86454556	+
GWHAAZE00000003	three_prime_UTR	86454557	86454606	+

Transcript Sequence
>GWHTAAZE012503 ATGTCGTGGGAAAACGAGATTGTGATGCGTGATGTTACTAATGCCGGCCTAGTTGTAAGTGATAGGATTGGAAGAGATGTGGCGGCTCAGTTCGACCTTGAAGAAGCCCTAGAAGCTTCTAGATACGCTAGTCATCCTTATTCTACTCATCCAAGAGAGTGGCCTCCTTTGGTTGAAGTGGTGGATACTCGGGAGCTACCTCCTGTACTCGTTGAAAGATATAATGCAGCTGGTGGGGAAGGAACTGCTTTATGTGGGATATTTCCAGAGATACGTAGAGCATGGGCATCAGTCGATAATTCTTTATTTCTTTGGCGGTTTGATAAATGGGATGGGCAATGTCCTGAATATAGTGTGGAGGAACAAGCTATCTGTGCTGTTGGCCTGGCCAAAGCTAAACCTGGCATATTTGTTGAGGCTATCCAGTATCTCTTGGTCTTGGCTACTCCAGTTGAGTTGATTCTTGTAGGTGTATGTTGCTCTGGTCGTGGTGATGGGGCTGATCCTTATGCAGAGGTATCACTGCAGCATTTGCCGGAGTACACAATTCCATCTGATGGAGTGACTATGACTTGTATAACTTGTACCGATAGAGGCCATATTTTCCTTGCTGGCCGTGATGGCCACATTTATGAATTACAGTATACAACTGGTTCAGGTTGGCACAAGCGATGTCGTAAAGTTTGCTTAACTACAGGTCTGGGAGGTATCATTTCAAAATGGGTTCTTCCAAATGTTTTCAAGTTTGGGGCGGTTGACCCAATTGTTGAAATGGTGGTTGATAATGAGAGGCACATTCTGTACGCTCGTACGGAAGAAATGAAAATTCAAGTCTTTGTTCTGGGCCCGAATGGGGACGGACCACTTAAGAAGGTGGCAGAAGAAAGGAATTTAATCAATCAGAGGGACCTACATTATGGCACTAGGCAGTCGGCAGGAACAAGGGGCCCTTCTCGCTCATCAAAGACATCTATAGTTTGTATTTCACCTTTATCTACACTAGAATCGAAGTGGTTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACCTTTCAACAGCTCAATCTAGTGGAAACAATGGTGCTGTTGGAGGTTTGGGTGGATTCAATACAAATCGTTTGAAGCCAAGCTGCTTAAAAGTTGTAACAACCAGACCTTCTCCGCCCTTGGGGGTGGGCGGTGGGCTCTCCTTTGGAGCTTTATCTCTTGCTGGTAGATCTCAGAGCGAAGATTTGTCACTGAAGATCGAATCGGCATATTATTCTGCTGGAACCATAATCCTTTCTGATTCATCTCCTTCGACCATTTCATCACTTCTCATTGTAAATAAGGATTCGAGCACTCAAGCATCTTCACCTGCTAGTTTAGGAACAGGTGCACGAAGTTCTAGAGCACTTCGGGAATCTGTATCGTCCCTGCCCATTGAAGGTCGAATGCTTTTTGTGGCTGATGTTCTACCACTACCAGATACAGCCGCCACTGTGCAGTCACTATATTCACAATTGGAGTTCTGTGGCTTTGATAACTCGGGAGAATCTTGTGAAAAGTTATCGGGCAAACTATGGGCTAGAGGCGACCTTCCAACCCAACATATATTACCTAGGAGGAGAATTGTTGTATTCAGTACTATGGGCATGATGGAAGTAGTTTTTAACCGTCCGATCGACATACTGAGAAGGTTGTTAGAGTCCAACTCCCCCAGATCAATATTAGAGGATTTTTTCAATCGTTTTGGAGCAGGAGAGGCGGCTGCTATGTGTTTAATGCTGTCTGCAAGGATAGTCAATAGTGAAAATCCGGTAAGCAATGTTGTTGCCGAGAAGGCAGCCGAGGCCTTTGAAGACCCAAGACTTGTTGGAATACCCCAACTTGAAGGTAGTGGTGCATTGTCAAATACTAGGACTGCAGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAAGAGGCCGAACCTGTGTTTTCGGGTGCTCATGAAGGGCTCTGCTTGTGCTCATCAAGGTTACTTTTACCTTTGTGGGAGCTTCCTGTTATGGTCACAAAAGGTGGTGTAGGTTCTTCAAATGCAGTGCCTGAAGATAGAATAGTGGTATGCAGACTCTCCATAGAGGCAATGCAAGTCCTTGAAGATAAAATCCGTTCTTTAGAAAAGTTCTTAAGGTCTAGAAGGAACCAGAGAAGGGGACTATATGGCTGTGTTGCTGGTCTAGGTGACTTGACCGGATCAATTCTGATTGGAACTGGTTCAGATCTCGGTGCTGGTGACCGAAGTATGGTGCGGAATTTATTTGGGTCTTATTCTCTTAATGTTGAGTCCAATGAAGTTGGTATATCAAGCAAGAGGCAACGGCTTCCATATAGTTCTGCAGAACTTGCAGCCATGGAGGTGAGAGCAATGGAATGCATCAGGCAGTTGCTCCTTAGATGTGGTGAAGCTCTATTTCTGCTCCAACTTCTTTCACAGCATAATATAACCCGCTTGGTTCAGGGCTTTGACGTGAATATGAAGCAGGCTTTATTACAGTTAACTTTTCATCAGCTAGTCTGTTCTGAGGAGGGTGACCGACTTGCTACAAGGCTTATTTCTTCTCTGATGGAGTATTACACTGGTCCTGATGGCAGGGGAACTGTAGATGATATTAGCGGTAGACTACGGGATGGTTGTCCAAGCTATTACAAAGAGTCTGATTACAAGTTCTACATAGCCGTCGAATGTCTAGAGAGAGCTGCTTCTACTTCTGATCCGGAGGAGAAAGAAAGTCTTGCTAGAGAGGCCTTCAATTGCTTGAGTAAAGTTCCAGAATCTGCTGATCTACAAACTGTTTGCAAGCGCTTTGAGGACCTGAGATTCTACGAAGCTGTGGTTCGCTTGCCGCTGCAAAAAGCACAGACTCTTGACCCTGCTGGTGATGCTTTCAACGAACAAATAGATGCTGGAATACGAGAGCATGCTCTTGCTCAGCGTGAGCGATGCTACGAGATTATCACCAGTGCCTTGCATGCTCTAAAAGGTGAATCTCCATCACAGAGGGAATTTGGGTCTCCCATTAGACCTGTTGCACAATCTGTTCTTGATCATGCCTCTCGGAAAAGATATATATGCCAGATCGTTCAACTTGGAGTCCAATCATCTGATAGAGTTTTTCACGAGTATCTGTACCGTACATTGATTGAAATTGGACTTGAGAATGAATTGCTGGAATATGGGGGCCCTGATCTTGTGCCGTTTCTTCAAAGTGCTGGTCGTGAACCCATACAAGAAGTTTGGGCTGTTTCTGCAGTAACATCTGCGGGTTCTCCTCTGGGGCATTCCGGTGTTCATATTGCATCAAATCAAGCAAAATACTTTGAGCTTCTGGCACGATATTATGTGATGAAAAGGCAGCATGTTCTTGCTGCTCATGTATTGTTAAGACTGGCGGAAAGGCGGTCCAGCGATGCTGGTGATGTCCCTACAATAGAACAAAGGCGTCAATACCTGAGTAATGCAGTTCTGCAGGCGAAGAGTGCAAGTGATAGTGATGGCCAAGTAGGTTCTTCTTCCAAGGGTGCCGCATTTGACAATGGATTGCTGGATTTGCTTGAAGGGAAACTTGCCGTTCTTCAGTTTCAAATAAAGATAAAAGAGGAATTGGAGGCTACAGCCTCTAGGTTAGAGGATGCTTCTTCTAGTGATGCATCTGAATCTTCTGTCCCAAATGATGGCTCTGCAGCTGATGCCAATTTTGCTCGCCATTTACGAGAAAAGGCCAAGGAGTTATCATTGGATCTAAAGAGCATTACTCAATTATACAATGAATATGCAGTTCCGTTTGAGCTCTGGGAGATATGTCTGGAGATGCTGTATTTTGCAAGTTACTCTGGTGATGCTGATAGTAGCATTGTAAGAGAGACCTGGGCTAGACTCATTGATCAAGCCCTTTCACAAGGTGGCATTGCTGAAGCTTGTTCAGTACTCAAGAGGGTTGGTTCCCACATTTATCCTGGAGATGTATCTGTTCTACCCTTAGATACGTTGTGTCTTCACCTTGAGAAAGCTGCATTGGAGCGAATGGCTTCTGGGGTTGAACCTGTTGGAGATGAGGATGTACCAAGGGCTCTTCTTGCAGCTTGCAAGGGTGCAGTAGAACCTGTGCTGAATACTTATGACCAACTGTTATCGAGTGGAGCAATTTTGCCATCGCCAAATCTCAAGTTACGCCTTTTGCGATCAGTGCTAGTGGTACTTCGTGAGTGGGCAATGTCTGCATTTGCACAAAGAATGGGTACAAGTACTACAGGAACATCTCTCATTCTCGGCGGAACATTTTCTTTGGAGAAAACTACAGCTATCAACCTAGGAGTTCGTGATAAAATCACAAGTGCAGCTAACAGGTATATGACAGAGGTGCGAAGATTGGCACTCCCACAGAACCAGACGGAGGCAGTGTACCGAGGTTTTAGAGAGCTTGAAGAGTCGCTGTTAAGTCCATTCTCTTTCGACAGATTTTGATTCTTCTCTTATAGTTTCATCATGTGGTATTTGTGTCTGCAATTTTTTTT

Network for GWHGAAZE012489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08801.12	Nucleoporin_N	54	549	5.30E-86
PF03177.15	Nucleoporin_C	884	1303	1.40E-07

Protein Sequence

>GWHPAAZE012496
MSWENEIVMRDVTNAGLVVSDRIGRDVAAQFDLEEALEASRYASHPYSTHPREWPPLVEVVDTRELPPVLVERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSVEEQAICAVGLAKAKPGIFVEAIQYLLVLATPVELILVGVCCSGRGDGADPYAEVSLQHLPEYTIPSDGVTMTCITCTDRGHIFLAGRDGHIYELQYTTGSGWHKRCRKVCLTTGLGGIISKWVLPNVFKFGAVDPIVEMVVDNERHILYARTEEMKIQVFVLGPNGDGPLKKVAEERNLINQRDLHYGTRQSAGTRGPSRSSKTSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTAQSSGNNGAVGGLGGFNTNRLKPSCLKVVTTRPSPPLGVGGGLSFGALSLAGRSQSEDLSLKIESAYYSAGTIILSDSSPSTISSLLIVNKDSSTQASSPASLGTGARSSRALRESVSSLPIEGRMLFVADVLPLPDTAATVQSLYSQLEFCGFDNSGESCEKLSGKLWARGDLPTQHILPRRRIVVFSTMGMMEVVFNRPIDILRRLLESNSPRSILEDFFNRFGAGEAAAMCLMLSARIVNSENPVSNVVAEKAAEAFEDPRLVGIPQLEGSGALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLLPLWELPVMVTKGGVGSSNAVPEDRIVVCRLSIEAMQVLEDKIRSLEKFLRSRRNQRRGLYGCVAGLGDLTGSILIGTGSDLGAGDRSMVRNLFGSYSLNVESNEVGISSKRQRLPYSSAELAAMEVRAMECIRQLLLRCGEALFLLQLLSQHNITRLVQGFDVNMKQALLQLTFHQLVCSEEGDRLATRLISSLMEYYTGPDGRGTVDDISGRLRDGCPSYYKESDYKFYIAVECLERAASTSDPEEKESLAREAFNCLSKVPESADLQTVCKRFEDLRFYEAVVRLPLQKAQTLDPAGDAFNEQIDAGIREHALAQRERCYEIITSALHALKGESPSQREFGSPIRPVAQSVLDHASRKRYICQIVQLGVQSSDRVFHEYLYRTLIEIGLENELLEYGGPDLVPFLQSAGREPIQEVWAVSAVTSAGSPLGHSGVHIASNQAKYFELLARYYVMKRQHVLAAHVLLRLAERRSSDAGDVPTIEQRRQYLSNAVLQAKSASDSDGQVGSSSKGAAFDNGLLDLLEGKLAVLQFQIKIKEELEATASRLEDASSSDASESSVPNDGSAADANFARHLREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFASYSGDADSSIVRETWARLIDQALSQGGIAEACSVLKRVGSHIYPGDVSVLPLDTLCLHLEKAALERMASGVEPVGDEDVPRALLAACKGAVEPVLNTYDQLLSSGAILPSPNLKLRLLRSVLVVLREWAMSAFAQRMGTSTTGTSLILGGTFSLEKTTAINLGVRDKITSAANRYMTEVRRLALPQNQTEAVYRGFRELEESLLSPFSFDRF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14312	NUP155, NUP170, NUP157	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.293
	SRR3591706	second leaf	6.766
	SRR3591707	mature leaf	7.109
	SRR3591708	Shoot apex	15.353
	SRR3591709	Stem	9.439
	SRR3591710	White floral bud	8.682
	SRR3591711	White flower	13.943
	SRR3591712	Green floral bud	11.545
	SRR3591713	Yellow flower	6.863
SRP173429	SRR8316895	Juvenile bud stage	9.116
	SRR8316896	Juvenile bud stage	10.136
	SRR8316897	Juvenile bud stage	5.749
	SRR8316894	Third green stage	4.866
	SRR8316900	Third green stage	10.876
	SRR8316901	Third green stage	9.412
	SRR8316898	Complete white stage	2.289
	SRR8316899	Complete white stage	9.851
	SRR8316903	Complete white stage	5.185
	SRR8316902	Silver flowering stage	4.160
	SRR8316904	Silver flowering stage	5.397
	SRR8316905	Silver flowering stage	2.232
	SRR8316906	Gold flowering stage	7.867
	SRR8316907	Gold flowering stage	5.990
	SRR8316908	Gold flowering stage	8.171
SRP132670	SRR6706286	Control	10.849
	SRR6706287	Light intensity 50%	11.352
	SRR6706288	Light intensity 20%	12.686
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.106
	CNS0095593	Slightly white alabastrum(diploid) 2	6.492
	CNS0095594	Slightly white alabastrum(diploid) 3	6.661
	CNS0095595	Whole white alabastrum(diploid) 2	5.725
	CNS0095596	Whole white alabastrum(diploid) 3	5.239
	CNS0095597	Whole white alabastrum(diploid) 4	4.817
	CNS0095598	Silvery flower (diploied) 1	8.069
	CNS0095599	Silvery flower (diploied) 2	8.562
	CNS0095600	Silvery flower (diploied) 3	10.773
	CNS0095601	Golden flower (diploid) 1	6.318
	CNS0095602	Golden flower (diploid) 2	11.077
	CNS0095603	Golden flower (diploid) 3	11.118
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.533
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.431
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.621
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.768
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.582
	CNS0095610	Silvery flower (tetraploid) 1	11.388
	CNS0095611	Silvery flower (tetraploid) 2	10.508
	CNS0095612	Silvery flower (tetraploid) 3	6.777
	CNS0095613	Golden flower (tetraploid) 1	4.025
	CNS0095614	Golden flower (tetraploid) 2	7.080
	CNS0095615	Golden flower (tetraploid) 3	6.314
CRA001975	CRR073297	Stem 1	13.952
	CRR073298	Stem 2	14.253
	CRR073299	Stem 3	14.090
	CRR073300	Leaf 1	13.092
	CRR073301	Leaf 2	12.183
	CRR073302	Leaf 3	9.644
	CRR073303	Juvenile bud 1	11.245
	CRR073304	Juvenile bud 2	5.590
	CRR073305	Juvenile bud 3	17.482
	CRR073306	Third green 1	2.171
	CRR073307	Third green 2	2.294
	CRR073308	Third green 3	2.785
	CRR073309	Second white 1	3.496
	CRR073310	Second white 2	3.310
	CRR073311	Second white 3	3.758
	CRR073312	Silver flowering 1	3.947
	CRR073313	Silver flowering 2	2.530
	CRR073314	Silver flowering 3	2.593
	CRR073315	Gold flowering 1	6.637
	CRR073316	Gold flowering 2	11.341
	CRR073317	Gold flowering 3	7.858
	CRR073318	Tawny withering 1	10.314
	CRR073319	Tawny withering 2	8.745
	CRR073320	Tawny withering 3	9.544