Gene detail

Detail information of GWHGAAZE012490

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007225206.1	hypothetical protein PRUPE_ppa002039mg [Prunus persica]
Swissprot	tr\|Q9ZU97\|VAC14_ARATH	Protein VAC14 homolog
trEMBL	tr\|M5Y3P4\|M5Y3P4_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26405.1}
TAIR10	AT2G01690.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86457804	86467416	+
GWHAAZE00000003	mRNA	86457804	86467416	+
GWHAAZE00000003	exon	86457804	86457893	+
GWHAAZE00000003	exon	86457984	86458097	+
GWHAAZE00000003	exon	86458239	86458304	+
GWHAAZE00000003	exon	86460533	86460622	+
GWHAAZE00000003	exon	86460701	86460820	+
GWHAAZE00000003	exon	86461207	86461235	+
GWHAAZE00000003	exon	86461353	86461495	+
GWHAAZE00000003	exon	86461582	86461676	+
GWHAAZE00000003	exon	86461937	86462023	+
GWHAAZE00000003	exon	86462175	86462282	+
GWHAAZE00000003	exon	86462455	86462565	+
GWHAAZE00000003	exon	86462710	86462820	+
GWHAAZE00000003	exon	86463848	86463913	+
GWHAAZE00000003	exon	86464158	86464273	+
GWHAAZE00000003	exon	86464360	86464480	+
GWHAAZE00000003	exon	86464882	86465049	+
GWHAAZE00000003	exon	86465147	86465275	+
GWHAAZE00000003	exon	86465628	86465696	+
GWHAAZE00000003	exon	86466974	86467416	+
GWHAAZE00000003	CDS	86457804	86457893	+
GWHAAZE00000003	CDS	86457984	86458097	+
GWHAAZE00000003	CDS	86458239	86458304	+
GWHAAZE00000003	CDS	86460533	86460622	+
GWHAAZE00000003	CDS	86460701	86460820	+
GWHAAZE00000003	CDS	86461207	86461235	+
GWHAAZE00000003	CDS	86461353	86461495	+
GWHAAZE00000003	CDS	86461582	86461676	+
GWHAAZE00000003	CDS	86461937	86462023	+
GWHAAZE00000003	CDS	86462175	86462282	+
GWHAAZE00000003	CDS	86462455	86462565	+
GWHAAZE00000003	CDS	86462710	86462820	+
GWHAAZE00000003	CDS	86463848	86463913	+
GWHAAZE00000003	CDS	86464158	86464273	+
GWHAAZE00000003	CDS	86464360	86464480	+
GWHAAZE00000003	CDS	86464882	86465049	+
GWHAAZE00000003	CDS	86465147	86465275	+
GWHAAZE00000003	CDS	86465628	86465696	+
GWHAAZE00000003	CDS	86466974	86467276	+
GWHAAZE00000003	three_prime_UTR	86467277	86467416	+

Transcript Sequence
>GWHTAAZE012504 ATGGCCGACGCTCTCTCCGTCATGTCTGCTTCTGTTCTCCGAAATCTCTCAGATAAGTTGTACGAGAAGCGGAAAAACGCTGCTCTTGAGGTCGAAGGAATTGTAAAACAACTGGCGGTGGCTGGAGATCATGATAAGATTACAGCCGTGATCAATTTGTTGACTAATGAGTTCACCTACTCGCCCCAGGCAAATCACCGGAAGGGTGGATTGATAGGATTGGCAGCTGCAACTGTTGGTTTGAGTTCTGAAGCAGCACAGCATCTTGAGCAAATTGTGCCTCCAGTCATAAATTCTTTTTCTGATCAAGACAGCAGAGTTCGATATTATGCCTGTGAAGCTCTGTACAATATTGCAAAGGTTGTTAGAGGAGATTTTATTGTGTTCTTCAATCAGATCTTTGATGCCTTATGTAAGCTTTCAGCAGACTCTGATGCCAATGTACAGAGTGCTGCTCATCTTTTAGATAGACTTGTAAAGGACATTGTCACAGAGAGTGATCAATTCAGCATTGAAGAATTTATACCGTTGTTGAGAGAGCGCATGAATGTCCTCAATCCTTATGTCCGCCAGTTTCTGGTAGGATGGATCACCGTATTAGACAGTGTTCCAGATATTGATATGTTGGGTTTTCTTCCTGATTTTCTTGATGGTTTATTTAACATGTTAAGTGATTCTAGCCATGAAATACGCCAACAAGCTGATTCAGCACTTTCGGAGTTTCTTCAAGAGATCAAGAACTCCCCATCTGTAGATTATGGTCGCATGGCTGAAATACTTGTTCAAAGGGCTGCTTCCCCGGACGAGTTTACTCGATTGACTGCTATTACATGGATAAATGAGTTTGTCAAACTAGGTGGTGATCAGCTTGTTCCTTACTATGCTGATATTTTGGGAGCCATTTTACCATGCATAGCTGATAAAGAAGAGAAAATCCGAGTTGTTGCTCGTGAAACTAATGAAGAACTTCGCTCGATTAAAGCTGATCCTTCTGAAGGATTTGATGTAGGAGCAATCCTTGCTATTGCAAGAAGGTGTAGTTCTGGACCTCTGGCAGTTTTGGGTTTCGTTATGACTATTAGGCAATTGTCTAGTGAATGGGAGGCTACCCGAATTGAGGCATTGCACTGGATTTCAGCCCTCCTAAATAGACACCGAGCAGAGGTCCTGTCTTTCCTGAATGATGTTTTTGACACTCTTCTGAAGGCACTATCAGATTCTTCTGATGAGGTAGTGCTGCTGGTGCTTGAGGTTCATGCATGCATAGCGAAAGATCCATTGCACTTTCGCCATCTTGTTGTTTTCTTGGTTCACAACTTTAGAATTGACAACTCCCTATTGGAGAAGCGTGGTGCTTTGATCATCCGGCGACTTTGTGTACTTTTAGATGCTGAAAGAGTTTATCGAGAACTCTCCACGATACTTGAGGGCGAAGCTGACCTGGATTTTGCATCTATTATGGTTCAGGCTTTGAATTTGATTCTGCTTACGTCCTCCGAGTTGTCTGGCCTTCGAGATCTTCTTAAACAATCACTGGTCAATGCTGCCGGGAAAGACTTATTTCTTTCTTTGTATGCTTCATGGTGCCATTCACCAATGGCAATAATAAGTCTTTGCTTATTAGCTCAGGCAAGAACTTACCAACATGCAAGTTCTGTCATTCAATCACTGGTTGAGGAGGATATTAATGTTAAATTTTTGGTCCAGCTGGATAAATTGATCCACCTGCTGGAGACTCCGATCTTTGCGTATCTTAGGTTGCAGCTTCTTGAACCTGGAAGATATATATGGTTGTTAAAAGCCTTGTATGGTCTTCTGATGCTTCTTCCCCAGCAAAGTGCCGCCTTCAAGATTTTACGGACTCGATTGAAAACCGTGCCTTCGTACTCCTTCAGTGGCGACCAATTTAAGCGGTCGTCATCAGGGAACCATTACTCGTACATGGCAGGCGGATCGCAAGTATCTGAGGATGGTGATGTGATGAACTCACATAACAATGTTTTGCATAATGGTATGAACCTTGCTTCTAAGCTGCAACAGTTCGAGCAAATGCAGCAGCAGCATCGTATGCATTCTAAGTCACAAGCACAGTCTCGTCACACTTCTACTTCATCGAAGGTTTTGTTTATTTCCTAGCCCTACTATATATTTTATATGTGCCCATTTGAGAAGCCCATCTCTTCATTTTCTATGTTCTTGTCAACTTTTGTTAGGAATTACGTGGTCTGGCTGACTTTATGAAGTTGAGGTTTATGTGAAATGTATTGGGCTTGAAC

Network for GWHGAAZE012490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12755.8	Vac14_Fab1_bd	65	161	7.10E-41
PF11916.9	Vac14_Fig4_bd	445	626	3.30E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.888
	SRR3591706	second leaf	25.054
	SRR3591707	mature leaf	31.556
	SRR3591708	Shoot apex	35.067
	SRR3591709	Stem	40.121
	SRR3591710	White floral bud	50.841
	SRR3591711	White flower	46.408
	SRR3591712	Green floral bud	40.678
	SRR3591713	Yellow flower	46.881
SRP173429	SRR8316895	Juvenile bud stage	20.018
	SRR8316896	Juvenile bud stage	28.712
	SRR8316897	Juvenile bud stage	13.024
	SRR8316894	Third green stage	13.265
	SRR8316900	Third green stage	34.840
	SRR8316901	Third green stage	29.602
	SRR8316898	Complete white stage	17.240
	SRR8316899	Complete white stage	44.474
	SRR8316903	Complete white stage	27.232
	SRR8316902	Silver flowering stage	12.510
	SRR8316904	Silver flowering stage	20.173
	SRR8316905	Silver flowering stage	9.652
	SRR8316906	Gold flowering stage	36.142
	SRR8316907	Gold flowering stage	34.595
	SRR8316908	Gold flowering stage	40.566
SRP132670	SRR6706286	Control	24.611
	SRR6706287	Light intensity 50%	26.591
	SRR6706288	Light intensity 20%	29.331
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.968
	CNS0095593	Slightly white alabastrum(diploid) 2	18.572
	CNS0095594	Slightly white alabastrum(diploid) 3	22.323
	CNS0095595	Whole white alabastrum(diploid) 2	21.620
	CNS0095596	Whole white alabastrum(diploid) 3	19.194
	CNS0095597	Whole white alabastrum(diploid) 4	20.588
	CNS0095598	Silvery flower (diploied) 1	18.003
	CNS0095599	Silvery flower (diploied) 2	15.873
	CNS0095600	Silvery flower (diploied) 3	32.279
	CNS0095601	Golden flower (diploid) 1	17.516
	CNS0095602	Golden flower (diploid) 2	34.713
	CNS0095603	Golden flower (diploid) 3	31.922
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.147
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.972
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.405
	CNS0095610	Silvery flower (tetraploid) 1	30.401
	CNS0095611	Silvery flower (tetraploid) 2	32.716
	CNS0095612	Silvery flower (tetraploid) 3	34.359
	CNS0095613	Golden flower (tetraploid) 1	22.689
	CNS0095614	Golden flower (tetraploid) 2	34.177
	CNS0095615	Golden flower (tetraploid) 3	44.271
CRA001975	CRR073297	Stem 1	34.601
	CRR073298	Stem 2	32.956
	CRR073299	Stem 3	29.886
	CRR073300	Leaf 1	39.433
	CRR073301	Leaf 2	33.646
	CRR073302	Leaf 3	27.997
	CRR073303	Juvenile bud 1	34.898
	CRR073304	Juvenile bud 2	26.560
	CRR073305	Juvenile bud 3	34.598
	CRR073306	Third green 1	25.062
	CRR073307	Third green 2	19.715
	CRR073308	Third green 3	23.685
	CRR073309	Second white 1	31.549
	CRR073310	Second white 2	31.003
	CRR073311	Second white 3	30.633
	CRR073312	Silver flowering 1	36.521
	CRR073313	Silver flowering 2	34.099
	CRR073314	Silver flowering 3	26.451
	CRR073315	Gold flowering 1	15.713
	CRR073316	Gold flowering 2	23.014
	CRR073317	Gold flowering 3	18.276
	CRR073318	Tawny withering 1	32.790
	CRR073319	Tawny withering 2	32.818
	CRR073320	Tawny withering 3	30.179