Gene detail

Detail information of GWHGAAZE012492

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009351546.1	0	PREDICTED: histone-lysine N-methyltransferase setd3 [Pyrus x bretschneideri]
Swissprot	tr\|Q9XI84\|RBCMT_ARATH	7E-14	[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|M5XXQ7\|M5XXQ7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24000.1}
TAIR10	AT1G24610.1	3E-172	Rubisco methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86492640	86495756	+
GWHAAZE00000003	mRNA	86492640	86495756	+
GWHAAZE00000003	exon	86492640	86493036	+
GWHAAZE00000003	exon	86494147	86494313	+
GWHAAZE00000003	exon	86494392	86494685	+
GWHAAZE00000003	exon	86494792	86495055	+
GWHAAZE00000003	exon	86495376	86495756	+
GWHAAZE00000003	CDS	86492640	86493036	+
GWHAAZE00000003	CDS	86494147	86494313	+
GWHAAZE00000003	CDS	86494392	86494685	+
GWHAAZE00000003	CDS	86494792	86495055	+
GWHAAZE00000003	CDS	86495376	86495756	+

Transcript Sequence
>GWHTAAZE012506 ATGCCGAACTTGATAAGCAGCTCAACTCCCACGAAGATGGCGTCAATGGCCATCAGAGGCTATTCCTTCTTAAGCAGCACCGCCAACAATAAGCCCTCTTCTTCATTAACCCTATTCCGTCGACTATCCTGCTCCGCCTCTATGTATCCTGCGCGGCTGGTTCGCCACCCACCTGACCTCATTAAGTGGGTGAGGACCCAAGGGGGTTTCGTTCACCCCTCGGTCAGGATATCTGAACTCGATTCCTACGGTCTTGGATTAGTCGTTTCTCATGAAATTCCAAAAGGGTCTGATCTTATTGCCTTACCCGATCACATACCCTTGAAGTTTGGGGAATCGGACGGTGGAGATGATGCTTCTTTTTCTGTTTTGCTCAACTTGGTTCGTCATGTTCCTGAGGAGCTGTGGGCTATGAAGCTGGGTCTAAAACTCCTGCAAGAAAGAGCTCAGTTAGGTTCTTACTGGTGGCCATACATCAGCAATCTACCCGAAGCTTACAGCGTACCAATTTTCTTTTCTGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTTCTTTATCAGGTAAATAAGAGATGTCGATTCCTTCTTGATTTTGAGAAAGAAGTGAAAAGTTCCCTTAAGAATCTGAAACCAGATGAACATCCATTTGAAGGCAAAGATGTAGACGCATCTTCCCTGGGATGGGCCATGTCAGCGGTTTCATCCCGAGCATTCCGCTTGCATGGGAAAAAACTGGAAGATGGGACCCACATTGATGTCCCCATGATGCTTCCGCTCATCGATATGTGCAACCACAGTTTCAATCCAAATGCCGAAATCGTTCAAGGACAAGACATTGAGAAAGAGAAAATGCTAGTGGTTGCAGCAACGGAGATCAAACGAGACGAACCTTTAGCACTTAACTACGGTTGTTTGAATAATGATCTTTTCCTTTTAGATTATGGATTTGTGATACCTTCAAATCCCTACGACTGTATCGAACTCAAGTATGATGGAGCTCTTTTGGATGCTGCAAGTATGGCTGCTGGTGTTTCATCCCCCAATTTTTCTTCACCAGCTCCATGGCAACAACATATTTTGTCTAAGCTAAATTTAGCTGGAGAAGATCCCCTTTTAAAGGTAAGCTTAGGAGGGCCGGAGTTGGTTGAGGGGCGCTTGTTGGCTGCTTTGAGAGCAATCCTTGCGAGTGACATGGAAATGGTACAAAAGCACAATCTGAATAAGCTTAAATCGTTATCAGTGGAGGCCCCTCTTGGAATATCAAATGAAGTAGCTGCTCTTCGCACTGTTATTGCACTGTGTGTGATTGCACTGGGGCATTTCCCCACTAAGATAATGGAAGACGAAACCGCATTGAAGCAAGAAGGTATTTCTGATTCAGCAAAGCTGGCCATCGAGTTCCGAATCCAAAAGAAGTTGGCAATTATAGATGTAATGAGAGACCTCACTAGGAGGGTAAAGTTACTCTTGTCAAATGAATCAATTGCATCTCAAATTTGA

Network for GWHGAAZE012492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	84	304	5.40E-09
PF09273.12	Rubis-subs-bind	354	473	3.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.106
	SRR3591706	second leaf	11.909
	SRR3591707	mature leaf	9.740
	SRR3591708	Shoot apex	13.116
	SRR3591709	Stem	8.633
	SRR3591710	White floral bud	15.720
	SRR3591711	White flower	13.403
	SRR3591712	Green floral bud	10.547
	SRR3591713	Yellow flower	10.032
SRP173429	SRR8316895	Juvenile bud stage	5.453
	SRR8316896	Juvenile bud stage	8.052
	SRR8316897	Juvenile bud stage	4.046
	SRR8316894	Third green stage	3.592
	SRR8316900	Third green stage	14.129
	SRR8316901	Third green stage	11.238
	SRR8316898	Complete white stage	10.903
	SRR8316899	Complete white stage	19.521
	SRR8316903	Complete white stage	17.184
	SRR8316902	Silver flowering stage	10.897
	SRR8316904	Silver flowering stage	16.457
	SRR8316905	Silver flowering stage	8.090
	SRR8316906	Gold flowering stage	26.588
	SRR8316907	Gold flowering stage	25.804
	SRR8316908	Gold flowering stage	24.020
SRP132670	SRR6706286	Control	9.183
	SRR6706287	Light intensity 50%	10.414
	SRR6706288	Light intensity 20%	12.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.308
	CNS0095593	Slightly white alabastrum(diploid) 2	4.386
	CNS0095594	Slightly white alabastrum(diploid) 3	5.286
	CNS0095595	Whole white alabastrum(diploid) 2	5.671
	CNS0095596	Whole white alabastrum(diploid) 3	5.985
	CNS0095597	Whole white alabastrum(diploid) 4	5.474
	CNS0095598	Silvery flower (diploied) 1	8.483
	CNS0095599	Silvery flower (diploied) 2	5.716
	CNS0095600	Silvery flower (diploied) 3	15.551
	CNS0095601	Golden flower (diploid) 1	6.165
	CNS0095602	Golden flower (diploid) 2	10.947
	CNS0095603	Golden flower (diploid) 3	10.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.855
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.769
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.959
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.932
	CNS0095610	Silvery flower (tetraploid) 1	8.125
	CNS0095611	Silvery flower (tetraploid) 2	9.185
	CNS0095612	Silvery flower (tetraploid) 3	11.732
	CNS0095613	Golden flower (tetraploid) 1	3.481
	CNS0095614	Golden flower (tetraploid) 2	5.565
	CNS0095615	Golden flower (tetraploid) 3	10.128
CRA001975	CRR073297	Stem 1	8.997
	CRR073298	Stem 2	8.955
	CRR073299	Stem 3	10.994
	CRR073300	Leaf 1	12.645
	CRR073301	Leaf 2	10.997
	CRR073302	Leaf 3	7.899
	CRR073303	Juvenile bud 1	12.509
	CRR073304	Juvenile bud 2	10.894
	CRR073305	Juvenile bud 3	10.244
	CRR073306	Third green 1	14.462
	CRR073307	Third green 2	11.606
	CRR073308	Third green 3	11.778
	CRR073309	Second white 1	13.671
	CRR073310	Second white 2	13.916
	CRR073311	Second white 3	16.411
	CRR073312	Silver flowering 1	13.882
	CRR073313	Silver flowering 2	10.103
	CRR073314	Silver flowering 3	10.496
	CRR073315	Gold flowering 1	13.283
	CRR073316	Gold flowering 2	13.276
	CRR073317	Gold flowering 3	13.465
	CRR073318	Tawny withering 1	9.022
	CRR073319	Tawny withering 2	5.415
	CRR073320	Tawny withering 3	7.870