Gene detail

Detail information of GWHGAAZE012497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277415.2	0	PREDICTED: aspartate carbamoyltransferase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q43087\|PYRB2_PEA	0	Aspartate carbamoyltransferase 2, chloroplastic (Precursor)
trEMBL	tr\|F6HES7\|F6HES7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50689.1}
TAIR10	AT3G20330.1	7E-158	PYRIMIDINE B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86571780	86574207	-
GWHAAZE00000003	mRNA	86571780	86574207	-
GWHAAZE00000003	exon	86571780	86571887	-
GWHAAZE00000003	exon	86571972	86572208	-
GWHAAZE00000003	exon	86572317	86572490	-
GWHAAZE00000003	exon	86572985	86573124	-
GWHAAZE00000003	exon	86573643	86574207	-
GWHAAZE00000003	CDS	86573643	86574207	-
GWHAAZE00000003	CDS	86572985	86573124	-
GWHAAZE00000003	CDS	86572317	86572490	-
GWHAAZE00000003	CDS	86571972	86572208	-
GWHAAZE00000003	CDS	86571780	86571887	-

Transcript Sequence
>GWHTAAZE012511 ATGGTTCCAACTTCTTCATCGTCCTTTTCAGGATGTACCCTGTCGACTGCTGTGCCTACTCCTAAAGCAGTATTGGGTTATAACGAAATCACGTGCAATTGTCCTAGTATCTTCTTTAGACAATCAGATCACCAAAAGTCCAGTTTTGCAAATACTGATTTAAAAGATTCAAGGATATTACACAACTATGGGTCAATATCATTAGACCAAAGTGGAAGGTTTTTACCTACACATAGAGTTCAGTGCGCCGCACTTGATGTTGAAAGATCGCCTTATTTTTCGGTGGGGAATAAGTTTCAACTTGATGATGTTATTGAAGCTCAACAATTTGATAGGGACATTCTAGGTGCTATTTTTGAAGTGGCGAATGAGATGGAGAAGGTTGAGAAAAATTCTCCTGGTAGCCAGATTCTCAAGGGTTATCTAATGGCCACTCTCTTTTATGAGCCTTCCACTAGAACTAGGCTTTCTTTCGAGTCTGCTATGAAACGGTTAGGTGGGGAGGTTTTGACAACCGAAAATGCACGGGAATTCTCATCAGCTGCAAAAGGAGAGACACTTGAAGATTCAATAAGGACGGTTGAAGGGTATGCGGATATAATTGTAATGAGGCACTTTGAAAGTGGTGCTGCTAGAAGAGCAGCAGCCACAGCCGGTGTTCCTGTTATTAATGCTGGGGATGGTCCAGGACAGCATCCCACTCAGGCCCTTCTAGATGTATATACTATCGAAAGAGAGATAGGCAAACTGGACGGCATTAAAGTTGGACTTGTTGGTGATCTTGCTAATGGAAGGACTGTTAGGTCACTTGCATATCTGCTCTCCAAGTACCACAACGTGAAGCTTTACTTTGTTTCCCCCGAAGTTGTAAAGATGAAAGATGATATTAAAGACTACTTGACATCAAAGGGGGTTGAATGGGAAGAAAGTGGTGATTTAATGGAAGTGGCTTCTAAATGTGATGTGGTTTATCAAACTCGCATTCAGCGAGAACGCTTTGGAGAGAGGATTGATCTTTACGAAGAAGCTCGAGGCAAGTACATTGTGGATCGCAATGTCTTGCACATGATGCAAAAGCACGCAATTATCATGCATCCGCTCCCTAGGCTCGATGAGATAACCGTGGAGGTTGATGCGGATCCAAGGGCTGCATATTTCAGACAAGCAAAGAATGGTCTATATATTCGAATGGCTCTGCTGAAGCTTCTACTTGTTGGTTGGTGA

Network for GWHGAAZE012497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02729.22	OTCace_N	104	244	2.20E-43
PF00185.25	OTCace	251	402	2.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00609	pyrB, PYR2	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006207	biological_process	'de novo' pyrimidine nucleobase biosynthetic process
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0004070	molecular_function	aspartate carbamoyltransferase activity
GO:0016597	molecular_function	amino acid binding
GO:0016743	molecular_function	carboxyl- or carbamoyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.539
	SRR3591706	second leaf	6.035
	SRR3591707	mature leaf	7.981
	SRR3591708	Shoot apex	11.905
	SRR3591709	Stem	14.277
	SRR3591710	White floral bud	13.601
	SRR3591711	White flower	22.341
	SRR3591712	Green floral bud	15.325
	SRR3591713	Yellow flower	27.548
SRP173429	SRR8316895	Juvenile bud stage	11.393
	SRR8316896	Juvenile bud stage	15.332
	SRR8316897	Juvenile bud stage	5.389
	SRR8316894	Third green stage	6.845
	SRR8316900	Third green stage	23.480
	SRR8316901	Third green stage	18.545
	SRR8316898	Complete white stage	13.031
	SRR8316899	Complete white stage	29.848
	SRR8316903	Complete white stage	19.670
	SRR8316902	Silver flowering stage	16.549
	SRR8316904	Silver flowering stage	21.919
	SRR8316905	Silver flowering stage	11.242
	SRR8316906	Gold flowering stage	52.816
	SRR8316907	Gold flowering stage	47.226
	SRR8316908	Gold flowering stage	44.315
SRP132670	SRR6706286	Control	14.527
	SRR6706287	Light intensity 50%	16.395
	SRR6706288	Light intensity 20%	18.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.611
	CNS0095593	Slightly white alabastrum(diploid) 2	13.573
	CNS0095594	Slightly white alabastrum(diploid) 3	14.406
	CNS0095595	Whole white alabastrum(diploid) 2	14.554
	CNS0095596	Whole white alabastrum(diploid) 3	17.391
	CNS0095597	Whole white alabastrum(diploid) 4	16.799
	CNS0095598	Silvery flower (diploied) 1	16.712
	CNS0095599	Silvery flower (diploied) 2	11.551
	CNS0095600	Silvery flower (diploied) 3	29.512
	CNS0095601	Golden flower (diploid) 1	12.360
	CNS0095602	Golden flower (diploid) 2	23.329
	CNS0095603	Golden flower (diploid) 3	24.563
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.471
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.622
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.205
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.316
	CNS0095610	Silvery flower (tetraploid) 1	28.737
	CNS0095611	Silvery flower (tetraploid) 2	28.410
	CNS0095612	Silvery flower (tetraploid) 3	23.063
	CNS0095613	Golden flower (tetraploid) 1	20.442
	CNS0095614	Golden flower (tetraploid) 2	24.445
	CNS0095615	Golden flower (tetraploid) 3	22.582
CRA001975	CRR073297	Stem 1	14.679
	CRR073298	Stem 2	15.192
	CRR073299	Stem 3	14.455
	CRR073300	Leaf 1	18.540
	CRR073301	Leaf 2	18.832
	CRR073302	Leaf 3	18.214
	CRR073303	Juvenile bud 1	21.601
	CRR073304	Juvenile bud 2	18.849
	CRR073305	Juvenile bud 3	19.691
	CRR073306	Third green 1	19.361
	CRR073307	Third green 2	18.075
	CRR073308	Third green 3	19.251
	CRR073309	Second white 1	30.656
	CRR073310	Second white 2	26.961
	CRR073311	Second white 3	36.740
	CRR073312	Silver flowering 1	26.087
	CRR073313	Silver flowering 2	22.196
	CRR073314	Silver flowering 3	18.879
	CRR073315	Gold flowering 1	7.901
	CRR073316	Gold flowering 2	11.660
	CRR073317	Gold flowering 3	7.110
	CRR073318	Tawny withering 1	21.383
	CRR073319	Tawny withering 2	13.838
	CRR073320	Tawny withering 3	19.654