Detail information of GWHGAAZE012499


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008366988.11.7325E-118PREDICTED: F-box protein SKIP28-like [Malus domestica]
Swissprottr|Q9ZU90|SKI28_ARATH3E-71F-box protein SKIP28
trEMBLtr|B9SP54|B9SP54_RICCO2E-118Putative uncharacterized protein {ECO:0000313|EMBL:EEF34583.1}
TAIR10AT2G01620.12E-59RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8658679886588338-
GWHAAZE00000003mRNA8658679886588338-
GWHAAZE00000003exon8658679886587358-
GWHAAZE00000003exon8658776286588093-
GWHAAZE00000003exon8658830286588338-
GWHAAZE00000003CDS8658830286588338-
GWHAAZE00000003CDS8658776286588093-
GWHAAZE00000003CDS8658679886587358-
Transcript Sequence

Network for GWHGAAZE012499

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box29641.20E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.650
SRR3591706second leaf2.115
SRR3591707mature leaf8.542
SRR3591708Shoot apex0.620
SRR3591709Stem3.628
SRR3591710White floral bud0.718
SRR3591711White flower3.088
SRR3591712Green floral bud0.776
SRR3591713Yellow flower3.601
SRP173429 SRR8316895Juvenile bud stage 1.740
SRR8316896Juvenile bud stage 1.803
SRR8316897Juvenile bud stage 1.919
SRR8316894Third green stage 0.712
SRR8316900Third green stage 1.259
SRR8316901Third green stage 1.541
SRR8316898Complete white stage 0.429
SRR8316899Complete white stage 3.315
SRR8316903Complete white stage 0.814
SRR8316902Silver flowering stage1.021
SRR8316904Silver flowering stage2.344
SRR8316905Silver flowering stage1.138
SRR8316906Gold flowering stage 3.905
SRR8316907Gold flowering stage 2.336
SRR8316908Gold flowering stage 4.238
SRP132670SRR6706286Control3.622
SRR6706287Light intensity 50%3.054
SRR6706288Light intensity 20%3.645
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.328
CNS0095593Slightly white alabastrum(diploid) 21.809
CNS0095594Slightly white alabastrum(diploid) 33.650
CNS0095595Whole white alabastrum(diploid) 22.433
CNS0095596Whole white alabastrum(diploid) 31.722
CNS0095597Whole white alabastrum(diploid) 42.656
CNS0095598Silvery flower (diploied) 111.555
CNS0095599Silvery flower (diploied) 26.686
CNS0095600Silvery flower (diploied) 34.950
CNS0095601Golden flower (diploid) 16.316
CNS0095602Golden flower (diploid) 27.852
CNS0095603Golden flower (diploid) 37.864
CNS0095604Slightly white alabastrum(tetraploid) 10.992
CNS0095605Slightly white alabastrum(tetraploid) 21.404
CNS0095606Slightly white alabastrum(tetraploid) 31.965
CNS0095607Whole white alabastrum(tetraploid) 10.360
CNS0095608Whole white alabastrum(tetraploid) 20.092
CNS0095609Whole white alabastrum(tetraploid) 30.961
CNS0095610Silvery flower (tetraploid) 11.922
CNS0095611Silvery flower (tetraploid) 22.832
CNS0095612Silvery flower (tetraploid) 30.728
CNS0095613Golden flower (tetraploid) 10.735
CNS0095614Golden flower (tetraploid) 21.867
CNS0095615Golden flower (tetraploid) 32.818
CRA001975CRR073297Stem 10.867
CRR073298Stem 22.015
CRR073299Stem 30.880
CRR073300Leaf 10.998
CRR073301Leaf 21.540
CRR073302Leaf 31.146
CRR073303Juvenile bud 11.478
CRR073304Juvenile bud 20.989
CRR073305Juvenile bud 30.745
CRR073306Third green 10.545
CRR073307Third green 21.027
CRR073308Third green 30.432
CRR073309Second white 11.155
CRR073310Second white 21.502
CRR073311Second white 30.758
CRR073312Silver flowering 11.570
CRR073313Silver flowering 20.387
CRR073314Silver flowering 30.437
CRR073315Gold flowering 15.843
CRR073316Gold flowering 27.705
CRR073317Gold flowering 310.394
CRR073318Tawny withering 12.339
CRR073319Tawny withering 22.355
CRR073320Tawny withering 31.194