Gene detail

Detail information of GWHGAAZE012505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631201.1	0	PREDICTED: cysteine-rich receptor-like protein kinase 10 [Vitis vinifera]
Swissprot	tr\|Q8GYA4\|CRK10_ARATH	5E-110	Cysteine-rich receptor-like protein kinase 10 (Precursor)
trEMBL	tr\|D7T8P5\|D7T8P5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26866.3}
TAIR10	AT1G70740.1	4E-142	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86658585	86661873	-
GWHAAZE00000003	mRNA	86658585	86661873	-
GWHAAZE00000003	exon	86658585	86658995	-
GWHAAZE00000003	exon	86659784	86659934	-
GWHAAZE00000003	exon	86660048	86660282	-
GWHAAZE00000003	exon	86660607	86660817	-
GWHAAZE00000003	exon	86661577	86661713	-
GWHAAZE00000003	exon	86661810	86661873	-
GWHAAZE00000003	CDS	86661810	86661873	-
GWHAAZE00000003	CDS	86661577	86661713	-
GWHAAZE00000003	CDS	86660607	86660817	-
GWHAAZE00000003	CDS	86660048	86660282	-
GWHAAZE00000003	CDS	86659784	86659934	-
GWHAAZE00000003	CDS	86658585	86658995	-

Transcript Sequence
>GWHTAAZE012519 ATGACCAAATCCAAAAACTTCTTTCATAACCTCTTCGCCCCCTTCAAATTCAACTCCAACAAAGGAGGAGAAGTTGAGGACTTGGAAAAAATTGCTGCACAAGAACAGAAGACAATCCCTTTCCAAACCCTAGTTTCTGCTACCAAAGATTTCCACCCTGATAACAAGCTTGGCCAAGGAGGTTTTGGTCCTGTTTACAAGGGAAAGTTGGAAGATGGGAGAGAGATTGCTGTTAAGAAGCTTGCACATAATTCAAGTCAGGGGAAGAAAGAGTTCATGAACGAAGCCAAGTTGTTAGCACGTGTACAGCACCGCAATGTTGTGAATTTGTTGGGGTACTGTGCTCACGGCACTGAAAAGCTTCTCGTGTATGAATATGTAGCTAATGAGAGCCTCGACAAACTTCTCTTCAAATCTGTTAGGCGAGATGCACTTGATTGGAAGAAGAGATACGACACCATTTTAGGCGTTGCTAGAGGTTTGCTTTACCTTCATGAAGATTCACACTGTTGCATCATCCACCGTGACATAAAGGCCAGCAATATTCTATTAGATGATAAATGGGTGCCTAAGATAGCTGATTTTGGCATGGCCAGGCTCTACCCTGAAGATCAAACACATGTTAACACTCGAGTAGCTGGTACCAATGGCTATATGGCACCGGAATACGTGATGCATGGTAATCTATCTGTTAAGGCAGATGTATTTAGCTTTGGTGTTGTGGTCCTGGAGCTTGTCAGTGGCCACAAGAACTCATCATTCAATCTAGATCCTGATTCGAATAATATGCTTGAGTGGGCGTATAAGCTATACAAGAGAGGTAAAATTCTGGAGATCATGGACTCCGTATTGGCGTCCTCTGCAGTTCATCATCAGGTGGCAATGTGTGTACAGATAGGACTATTGTGCACCCAATCGGACCCACATTTACGGCCCGACATGCGTCGTGTGGTCGTAATGCTATCAAAGAAATCAGGCATACTTGAAGAACCGACCAGGCCCGGATACCCAGGTTCAAGGTACAGAAGATCCCGCAGGCCTAATACTACATCATCATCCTCTAGAGCCGGAACTTCTGGTGCATCGAATTCACACTCGTTTGGTTCCACTAATACCGTTTCTAATAGCGTGAATACTGCAACTGCATCAACATCGACTCTTACGAGCCCAAGACTGGACCCTCACGGTAAACGTCCCATGAAGGGGTAA

Network for GWHGAAZE012505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	54	320	4.60E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.992
	SRR3591706	second leaf	19.225
	SRR3591707	mature leaf	20.923
	SRR3591708	Shoot apex	32.977
	SRR3591709	Stem	47.101
	SRR3591710	White floral bud	44.729
	SRR3591711	White flower	63.117
	SRR3591712	Green floral bud	39.917
	SRR3591713	Yellow flower	44.060
SRP173429	SRR8316895	Juvenile bud stage	46.647
	SRR8316896	Juvenile bud stage	41.071
	SRR8316897	Juvenile bud stage	47.317
	SRR8316894	Third green stage	13.464
	SRR8316900	Third green stage	24.830
	SRR8316901	Third green stage	36.101
	SRR8316898	Complete white stage	8.497
	SRR8316899	Complete white stage	64.845
	SRR8316903	Complete white stage	12.608
	SRR8316902	Silver flowering stage	9.858
	SRR8316904	Silver flowering stage	12.656
	SRR8316905	Silver flowering stage	5.558
	SRR8316906	Gold flowering stage	23.785
	SRR8316907	Gold flowering stage	16.382
	SRR8316908	Gold flowering stage	27.726
SRP132670	SRR6706286	Control	14.853
	SRR6706287	Light intensity 50%	16.160
	SRR6706288	Light intensity 20%	16.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.359
	CNS0095593	Slightly white alabastrum(diploid) 2	44.502
	CNS0095594	Slightly white alabastrum(diploid) 3	46.704
	CNS0095595	Whole white alabastrum(diploid) 2	26.536
	CNS0095596	Whole white alabastrum(diploid) 3	10.701
	CNS0095597	Whole white alabastrum(diploid) 4	24.425
	CNS0095598	Silvery flower (diploied) 1	59.136
	CNS0095599	Silvery flower (diploied) 2	39.707
	CNS0095600	Silvery flower (diploied) 3	36.838
	CNS0095601	Golden flower (diploid) 1	48.553
	CNS0095602	Golden flower (diploid) 2	42.136
	CNS0095603	Golden flower (diploid) 3	45.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.329
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.271
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.655
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.115
	CNS0095610	Silvery flower (tetraploid) 1	19.492
	CNS0095611	Silvery flower (tetraploid) 2	22.471
	CNS0095612	Silvery flower (tetraploid) 3	31.004
	CNS0095613	Golden flower (tetraploid) 1	16.025
	CNS0095614	Golden flower (tetraploid) 2	21.414
	CNS0095615	Golden flower (tetraploid) 3	26.420
CRA001975	CRR073297	Stem 1	35.181
	CRR073298	Stem 2	29.037
	CRR073299	Stem 3	30.254
	CRR073300	Leaf 1	27.143
	CRR073301	Leaf 2	39.200
	CRR073302	Leaf 3	26.101
	CRR073303	Juvenile bud 1	27.877
	CRR073304	Juvenile bud 2	23.161
	CRR073305	Juvenile bud 3	41.207
	CRR073306	Third green 1	20.570
	CRR073307	Third green 2	21.637
	CRR073308	Third green 3	18.655
	CRR073309	Second white 1	16.310
	CRR073310	Second white 2	14.151
	CRR073311	Second white 3	13.279
	CRR073312	Silver flowering 1	30.668
	CRR073313	Silver flowering 2	29.884
	CRR073314	Silver flowering 3	22.049
	CRR073315	Gold flowering 1	45.569
	CRR073316	Gold flowering 2	45.194
	CRR073317	Gold flowering 3	36.691
	CRR073318	Tawny withering 1	44.007
	CRR073319	Tawny withering 2	53.521
	CRR073320	Tawny withering 3	47.142