Gene detail

Detail information of GWHGAAZE012511

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284648.1	PREDICTED: DELLA protein GAI1 [Vitis vinifera]
Swissprot	tr\|Q8S4W7\|GAI1_VITVI	DELLA protein GAI1
trEMBL	tr\|F6HFG4\|F6HFG4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50813.1}
TAIR10	AT1G14920.1	GRAS family transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86731665	86733275	+
GWHAAZE00000003	mRNA	86731665	86733275	+
GWHAAZE00000003	exon	86731665	86731903	+
GWHAAZE00000003	exon	86731979	86732945	+
GWHAAZE00000003	exon	86732979	86733275	+
GWHAAZE00000003	CDS	86731665	86731903	+
GWHAAZE00000003	CDS	86731979	86732945	+
GWHAAZE00000003	CDS	86732979	86733275	+

Transcript Sequence
>GWHTAAZE012525 ATGTGGCCGGATGAATCCCACCAAGACGCAGGGGACGACGAGCTCCTTGCCTTACTAGGCTACAAGGTCAGATCCTCCGACATGGCCGACGTAGCTCAGAAACTCGAACACCTCGAAGAAGTAATGGTTAAAACACAAGAAGACGGCGGCTTATCACACTTAGCCACCGAAACTGTTCACTATAATCCTTCCGATCTTTCATCGTGGCTCGAATCTATGATCACCGAACTCAACCCCATTAGTAATAATAATAATAATAATAACGATTACGATCTCAAAGCTATTCCAGGTAACGCTATTTACCCACCACAACAACCAATCAAACGACTGAAACCGAATCCCTCATTCGCGTCAACGTCCTCCACCGAGTCCTCTCGTCCAGTTATCGTCGTTGACTCGCAGGAAAATGGGGTCAGACTTGTTCACACTCTAATGGCTTGTGCCGAAGCTGTTCAGCAAGAGAATTTCAAGGTAGCAGAGGCTCTGGTGAAGCAAATTGGATTCCTAGCCGTGGTTCAGGCCGGAGCTATGAGGAAAGTAGCCACGTATTTTGCTGAAGCTCTTGCGCGAAGAATTTACCGGTTGTACCCTCAGAACCCTCACGATTCTGCCTTCTCCGATCTTCTTCAGATGCATTTTTACGAGACTTGCCCTTACTTGAAATTTGCTCATTTCACTGCGAATCAAGCTATCCTTGAAGCATTTGCTAATAAAAAGCGTGTACACGTCATTGATTTCAGTATGAAGCAGGGGATGCAGTGGCCGGCCTTGATGCAGGCTCTGGCTCTTCGCTCCGGCGGTCCACCGAGTTTTCGGTTAACCGGGATTGGACCGCCCTCGCACGATAATACCGATCATTTGCAGGAAGTGGGGTGGAAATTGGCTCAATTGGCCGAAACAATGCATGTAGAGTTCGAATTTAGGGGTTTTGTGGCGAATAGTTTAGCGGATCTCGATGCATCGATGCTCGATTTAAGAGAAGGTGAAGTTGTGGCGGTCAACTCGGTTTTTGAGCTTCATCAGTTGCTAGCACGGCCCACTGCGATTGAGAGGGTTTTAGCGGCGGTAAAGGAGATGAAACCGGAGATTTTTACGGTGGTCGAGCAAGAAGCGAACCACAACGGTCCGGTTTTTCTAGACCGGTTCACCGAGTCGTTGCATTATTACTCGACTTTGTTTGACTCGTTGGAGAGCTGCGGCGGTAGTGACAAGGTGATGTCGGAGGTGTATTTGGGGAGGCAGATATGTAACGTGGTGGCGTGTGAAGGACCGGACCGGGTTGAGAGGCACGAGACGGTAGTTCAGTGGAGGAAGCGGCTCGACTCGGCAGGGTTCGAACCGGTTCACTTGGGTTCAAATGCGTATAGGCAGGCGAGTATGTTGTTAGCGTTGTTTGCTGGTGGGGATGGTTACAGAGTGGAAGAGAATAATGGGTGTTTGATGTTGGGTTGGCACACTCGCCCACTCATAACCACCTCGGCTTGGAAACTCAGTAACAGCTGA

Network for GWHGAAZE012511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12041.9	DELLA	13	80	2.00E-34
PF03514.15	GRAS	140	496	4.20E-138

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
K14494	DELLA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.773
	SRR3591706	second leaf	93.994
	SRR3591707	mature leaf	99.157
	SRR3591708	Shoot apex	121.025
	SRR3591709	Stem	76.339
	SRR3591710	White floral bud	118.635
	SRR3591711	White flower	68.591
	SRR3591712	Green floral bud	199.431
	SRR3591713	Yellow flower	26.137
SRP173429	SRR8316895	Juvenile bud stage	54.167
	SRR8316896	Juvenile bud stage	71.228
	SRR8316897	Juvenile bud stage	26.842
	SRR8316894	Third green stage	54.726
	SRR8316900	Third green stage	199.594
	SRR8316901	Third green stage	188.620
	SRR8316898	Complete white stage	42.925
	SRR8316899	Complete white stage	247.202
	SRR8316903	Complete white stage	87.293
	SRR8316902	Silver flowering stage	25.829
	SRR8316904	Silver flowering stage	43.041
	SRR8316905	Silver flowering stage	25.631
	SRR8316906	Gold flowering stage	51.410
	SRR8316907	Gold flowering stage	38.651
	SRR8316908	Gold flowering stage	53.228
SRP132670	SRR6706286	Control	277.848
	SRR6706287	Light intensity 50%	281.429
	SRR6706288	Light intensity 20%	287.746
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	128.702
	CNS0095593	Slightly white alabastrum(diploid) 2	177.631
	CNS0095594	Slightly white alabastrum(diploid) 3	111.710
	CNS0095595	Whole white alabastrum(diploid) 2	134.762
	CNS0095596	Whole white alabastrum(diploid) 3	136.357
	CNS0095597	Whole white alabastrum(diploid) 4	134.270
	CNS0095598	Silvery flower (diploied) 1	48.871
	CNS0095599	Silvery flower (diploied) 2	37.503
	CNS0095600	Silvery flower (diploied) 3	60.713
	CNS0095601	Golden flower (diploid) 1	28.399
	CNS0095602	Golden flower (diploid) 2	47.033
	CNS0095603	Golden flower (diploid) 3	43.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	200.754
	CNS0095605	Slightly white alabastrum(tetraploid) 2	160.314
	CNS0095606	Slightly white alabastrum(tetraploid) 3	390.134
	CNS0095607	Whole white alabastrum(tetraploid) 1	95.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	108.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	247.416
	CNS0095610	Silvery flower (tetraploid) 1	71.893
	CNS0095611	Silvery flower (tetraploid) 2	63.129
	CNS0095612	Silvery flower (tetraploid) 3	26.004
	CNS0095613	Golden flower (tetraploid) 1	22.826
	CNS0095614	Golden flower (tetraploid) 2	69.833
	CNS0095615	Golden flower (tetraploid) 3	25.863
CRA001975	CRR073297	Stem 1	237.191
	CRR073298	Stem 2	301.831
	CRR073299	Stem 3	275.581
	CRR073300	Leaf 1	396.002
	CRR073301	Leaf 2	377.948
	CRR073302	Leaf 3	301.348
	CRR073303	Juvenile bud 1	307.271
	CRR073304	Juvenile bud 2	192.280
	CRR073305	Juvenile bud 3	451.614
	CRR073306	Third green 1	127.744
	CRR073307	Third green 2	104.182
	CRR073308	Third green 3	118.269
	CRR073309	Second white 1	138.364
	CRR073310	Second white 2	77.707
	CRR073311	Second white 3	92.210
	CRR073312	Silver flowering 1	91.205
	CRR073313	Silver flowering 2	105.116
	CRR073314	Silver flowering 3	67.043
	CRR073315	Gold flowering 1	34.116
	CRR073316	Gold flowering 2	37.282
	CRR073317	Gold flowering 3	58.774
	CRR073318	Tawny withering 1	68.405
	CRR073319	Tawny withering 2	53.678
	CRR073320	Tawny withering 3	72.895