Gene detail

Detail information of GWHGAAZE012527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657288.1	0	PREDICTED: uncharacterized protein LOC100252614 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LUW6\|RH9_ARATH	0.00000002	DEAD-box ATP-dependent RNA helicase 9
trEMBL	tr\|F6HFI2\|F6HFI2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50831.1}
TAIR10	AT2G01440.1	0	DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87213886	87226456	+
GWHAAZE00000003	mRNA	87213886	87226456	+
GWHAAZE00000003	exon	87213886	87213992	+
GWHAAZE00000003	exon	87214116	87214251	+
GWHAAZE00000003	exon	87215572	87216039	+
GWHAAZE00000003	exon	87216123	87216305	+
GWHAAZE00000003	exon	87216392	87216504	+
GWHAAZE00000003	exon	87217959	87218062	+
GWHAAZE00000003	exon	87218140	87218186	+
GWHAAZE00000003	exon	87218981	87219144	+
GWHAAZE00000003	exon	87219447	87219528	+
GWHAAZE00000003	exon	87219595	87219633	+
GWHAAZE00000003	exon	87222923	87223156	+
GWHAAZE00000003	exon	87223245	87223316	+
GWHAAZE00000003	exon	87223505	87223648	+
GWHAAZE00000003	exon	87224112	87224255	+
GWHAAZE00000003	exon	87224435	87224587	+
GWHAAZE00000003	exon	87224682	87224765	+
GWHAAZE00000003	exon	87225292	87225864	+
GWHAAZE00000003	exon	87226364	87226456	+
GWHAAZE00000003	CDS	87213886	87213992	+
GWHAAZE00000003	CDS	87214116	87214251	+
GWHAAZE00000003	CDS	87215572	87216039	+
GWHAAZE00000003	CDS	87216123	87216305	+
GWHAAZE00000003	CDS	87216392	87216504	+
GWHAAZE00000003	CDS	87217959	87218062	+
GWHAAZE00000003	CDS	87218140	87218186	+
GWHAAZE00000003	CDS	87218981	87219144	+
GWHAAZE00000003	CDS	87219447	87219528	+
GWHAAZE00000003	CDS	87219595	87219633	+
GWHAAZE00000003	CDS	87222923	87223156	+
GWHAAZE00000003	CDS	87223245	87223316	+
GWHAAZE00000003	CDS	87223505	87223648	+
GWHAAZE00000003	CDS	87224112	87224255	+
GWHAAZE00000003	CDS	87224435	87224587	+
GWHAAZE00000003	CDS	87224682	87224765	+
GWHAAZE00000003	CDS	87225292	87225864	+
GWHAAZE00000003	CDS	87226364	87226456	+

Transcript Sequence
>GWHTAAZE012541 ATGAACAAACTTTTGTTTCTGCAGTGTTTTGGTGAGAAATGCTTGCGGAGTGCGATTATATTTGAGGCTGAGAGAGGATATAGAAATGTATTGGGTAAGAAAATGAGGTTCAATAATTTCCTCTTCTCTAAGATTTCTAGATTGTGCTCACGCTCAAAGCACAAGTCTGCGGAAAAGCTGTTGGAGGAGGTACATAGTTATGACAGGGTAGGCATCTCGGATCGGTCGAAGCTTCTTAATAAGGTATCGGTCTTGATGGGTTACAATAATTTACAAGATTTATTTGAGAATGAAAGATCTGGAAAGGAGTCTGTCATGAATCTTGAAGATGTCAATGATTTTGAAGACTCCCTGGAATGTAAACGGTTTCCTTCCATCACTTTGGGTTTTTCTCCACGTGTGGATTTGTTTGATGGGGCCGCATATTTCCCTGAAAGGACGGGACTTTTAGCCGATCAGATTCGTAAAGAATTTATCTCCAGCTCTATTGGTGCAAAGTGGGGCAATTCTGATAGTATATGTGAAACATGGGATTCTGTACCCACCCTTCAAAATGTGAAATCTTCCTCATTAGCGGAAGATAGCCCTTACAATTTGAATTTAGTTGCTGAATCATTGACTTTGGAGACTGAACTAATATCAGATCATGTTAGTCTTTGTGAAACATCACCTTTGCAAGTTGCAAGTGATCAAAATGTGAAATCTTCCTTGACCATGGAGACTGAAAAAAAATCAGATCTAGTGTTCATCAAGGATGAACGTGTTGATAAAGATGTTCTTGAAGCCCAACAAAGTGCCTTACCTGTTGAGTTGAATCTTGATAAAACTATCAGTTGTGTAGCTGGACTGACTAAGAGGCAGTGTCGTCAGCTTGAAAACATTGGCTTTCACACGTTGCGGAAGTTGCTGCACCATTTTCCTCGGACTTACGCTGATCTACAGAATGCACAGATTGGAGTTGATGATGGGCAGTACTTAATTTTTGTTGGAAATATATTATCTTCCAGGGGAATTAAGGCTAGCTGTTCTTTCTCATTTCTTGAGGTGGTTGTTGGATGTGAGGTTGCGGATAGTGATTCAACTGCTGAACCTATCCTTGATGAGAATGATAAAGTCTTGAAGAGAAGCATAAAGAGGGAGATCTTGTATGTGTTAGTGGTGAGGACTATGCGCACAAAAGATCACTATGAAATGAGGGAATATAATATTGATGTGATTCAGGATGGACACGATTCACATGATTATGCAAAGGGGAGGCCATATCCAATATACCCATCAAAAGGGGGACTAAATCCAAGTTTTCTTAGAGACATCATATCAAGAACTCTACAGTCCTTGCCTGCCAACGTTGATCCGATTCCCAAGGATATTACTCAAGAATTTGGACTTGTAGGCCTTCATGATAGGTTCAACTCTGAGGAATATGATCAGATAAGATCTAAGTTGGCGCGCTTGTTTCAAATGCTTGAAGGACTTGGTACGCAAATTGAAAAAGATGTATTGCTTGATAAGTACAGGAAGCCTGAACTAAATGCAGTATTCATTGAGGAATGGTGCAGTCTTACTAAGGAATTTTTGAAGGCCCTTCCATATTCCCTTACTTCTAGTCAGCTAAGTGCTGTTTCAGAAATTATTTGGGATCTAAAACGACAAGTTCCCATGAATCGACTTTTGCAGGGTGATGTTGGATGTGGGAAAACTGTGGTAGCATTCTTGGCATGCATGGAGGTTATTGGCTCAGGTTATCAGGCAGCTTTCATGGTTCCTACTGAATTGCTTGCTATCCAGCATCATGAGCACCTTCTTAATTTGCTGGAGAATATTGCGGATGTGCATTGCAAACCTTCTGTTGCTTTGCTAACAGGATCTACACCATCGAAACAATCACGGCTAGGCCTCCAAAATGGAGATATATCATTTGTCATCGGGACCCACAGTTTAATAGCTGATAAAGTGGAATTCTCAGCTCTGCGCATTGCTGTGGTAGATGAGCAACATCGTTTTGGTGTGATCCAGAGAGGAAGGTTCAATAGCAAGCTATATTGTAATTCTGTGAGTTCTAGACTGGCGGCAACCAATTCAAATGTCACTTCAAAAGGTGATATGGCTCCTCATGTTCTTGCAATGTCAGCCACCCCAATCCCGAGGACCCTTGCTTTGGCCTTGTATGGAGACATGTCGCTAACGCAAATAACTGGTTTACCACCCGGAAGAGTACCTGTTGAAACATACATCATTGAAGCAAACGAGACTGGATATGAGAAAGTGTACCAGATGATGCTGGATGAACTAAAAGCAGGAGGAAAAGTATATCTTGTCTACCCAGTCATCGAGCAATCCGAGCAACTGCCTCAGCTTCGTGCTGCTTCAGCCGATTTTGAAGCTATATCTTCTAGATTTGAAAATTACAACTGTGGATTATTACATGGAAAAATGAAGAGCGACGAAAAAGAAGGCGCTTTGAGACGCTTTAGATCTGGAGACACGCATATACTGCTTTCGACTCAAGTAATTGAGATTGGTGTTGATGTTCCTGATGCATCTATGATGATTGTTATGAATGCAGAGAGATTTGGTATTGCTCAATTGCACCAGCTGAGGGGGAGAGTTGGAAGAGGAACAAGGAAGTCGAAATGTATACTACTAGCACCTACAGCTAGTAGCCTAAATAGGTTGAAGGTGCTTGAAAAATCATCTGATGGTTTTTATTTAGCAAATATGGACCTTCTTCTACGTGGGCCCGGTGACTTGCTTGGCAAGAAACAGTCAGGGCACCTTCCGGAGTTTCCTATTACTAGATTAGAAATTGACGGAAATATTCTACAGGATGCTCATATGGCTGCCCTGAAAACGTTAAGTATCTCTCATGATCTGGAGAAATTCCCATATCTTAAAGCGGAGCTTAGCATGCGGCAGCCACTCTGCCTTCTAGGTGATTAA

Network for GWHGAAZE012527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	555	716	3.30E-14
PF00271.32	Helicase_C	756	873	7.30E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03655	recG	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006310	biological_process	DNA recombination
GO:0003678	molecular_function	DNA helicase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.635
	SRR3591706	second leaf	10.424
	SRR3591707	mature leaf	15.016
	SRR3591708	Shoot apex	21.263
	SRR3591709	Stem	10.532
	SRR3591710	White floral bud	9.180
	SRR3591711	White flower	14.255
	SRR3591712	Green floral bud	8.192
	SRR3591713	Yellow flower	12.334
SRP173429	SRR8316895	Juvenile bud stage	7.668
	SRR8316896	Juvenile bud stage	9.755
	SRR8316897	Juvenile bud stage	6.054
	SRR8316894	Third green stage	4.198
	SRR8316900	Third green stage	14.216
	SRR8316901	Third green stage	11.337
	SRR8316898	Complete white stage	4.086
	SRR8316899	Complete white stage	14.899
	SRR8316903	Complete white stage	8.664
	SRR8316902	Silver flowering stage	4.384
	SRR8316904	Silver flowering stage	6.704
	SRR8316905	Silver flowering stage	3.018
	SRR8316906	Gold flowering stage	9.888
	SRR8316907	Gold flowering stage	9.128
	SRR8316908	Gold flowering stage	11.435
SRP132670	SRR6706286	Control	13.559
	SRR6706287	Light intensity 50%	13.063
	SRR6706288	Light intensity 20%	13.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.455
	CNS0095593	Slightly white alabastrum(diploid) 2	6.993
	CNS0095594	Slightly white alabastrum(diploid) 3	4.799
	CNS0095595	Whole white alabastrum(diploid) 2	6.631
	CNS0095596	Whole white alabastrum(diploid) 3	7.358
	CNS0095597	Whole white alabastrum(diploid) 4	6.191
	CNS0095598	Silvery flower (diploied) 1	6.139
	CNS0095599	Silvery flower (diploied) 2	5.830
	CNS0095600	Silvery flower (diploied) 3	12.743
	CNS0095601	Golden flower (diploid) 1	6.840
	CNS0095602	Golden flower (diploid) 2	10.182
	CNS0095603	Golden flower (diploid) 3	8.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.908
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.382
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.736
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.449
	CNS0095610	Silvery flower (tetraploid) 1	17.105
	CNS0095611	Silvery flower (tetraploid) 2	18.508
	CNS0095612	Silvery flower (tetraploid) 3	19.897
	CNS0095613	Golden flower (tetraploid) 1	8.356
	CNS0095614	Golden flower (tetraploid) 2	12.363
	CNS0095615	Golden flower (tetraploid) 3	10.918
CRA001975	CRR073297	Stem 1	12.801
	CRR073298	Stem 2	12.073
	CRR073299	Stem 3	10.515
	CRR073300	Leaf 1	14.399
	CRR073301	Leaf 2	14.393
	CRR073302	Leaf 3	9.847
	CRR073303	Juvenile bud 1	12.011
	CRR073304	Juvenile bud 2	8.172
	CRR073305	Juvenile bud 3	10.790
	CRR073306	Third green 1	4.473
	CRR073307	Third green 2	3.086
	CRR073308	Third green 3	4.014
	CRR073309	Second white 1	4.930
	CRR073310	Second white 2	6.543
	CRR073311	Second white 3	5.472
	CRR073312	Silver flowering 1	3.056
	CRR073313	Silver flowering 2	2.900
	CRR073314	Silver flowering 3	3.678
	CRR073315	Gold flowering 1	8.668
	CRR073316	Gold flowering 2	17.522
	CRR073317	Gold flowering 3	6.472
	CRR073318	Tawny withering 1	6.463
	CRR073319	Tawny withering 2	6.588
	CRR073320	Tawny withering 3	6.257