Gene detail

Detail information of GWHGAAZE012538

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284132.1	4.1454E-121	PREDICTED: uncharacterized protein DDB_G0280315 [Vitis vinifera]
trEMBL	tr\|F6HFJ4\|F6HFJ4_VITVI	2E-121	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50843.1}
TAIR10	AT1G23000.1	2E-34	Heavy metal transport/detoxification superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87456446	87458263	-
GWHAAZE00000003	mRNA	87456446	87458263	-
GWHAAZE00000003	exon	87456446	87457458	-
GWHAAZE00000003	exon	87457992	87458067	-
GWHAAZE00000003	exon	87458225	87458263	-
GWHAAZE00000003	CDS	87458225	87458263	-
GWHAAZE00000003	CDS	87457992	87458067	-
GWHAAZE00000003	CDS	87456446	87457458	-

Transcript Sequence
>GWHTAAZE012552 ATGACTAAGGATGAAGACTTTAAGCTCCTCAAGATCCAGACTTGCATTCTTAGAGTGAACATACACTGTGATGGGTGTAAACAGAAAGTGAAGAAACTGCTTCAGAGGATTGAAGGTGTTTACCAAGTAATTATAGATGCAGAGCTGCAAAAAGTTACGGTCTCTGGTAGTGTTGACTCTGCAACTTTGATCAAGAAACTTGTTAGGGCTGGAAAGCATGCTGAGCTTTGGTCAAACAAGATCAATCAAACCCAAAAACAAAAGGGTAACTGTATCAAAGAAGACAACAAGAAGAACATCAACAACAAAGGCCAAAAGCAAGGGTTGGTCAAGAACCTTGAAGCCCTCAACAAGAATCAGCAAAAGTTCCCATCCTTGGGCTTGTTGGAGGATGAAGATTACCTTGATGATGGTGATGATGAAGAAGAAATTGAGGAAGATGAGGATATGAAACTATTCAGAGAAAAGATCAGCCAACTAGGTCTCCTTAAGCAGCAACAAGCAATTGATGCCAACAACAATGCAAGAAAGGGTGCTGCAGCAGTGGCCAACAATGGTGGAAATGGAAATGGGGGAAAGAAGGGAAACCCAAATCAGAACCTGGGTATGAAGGGGAATGCTGTGGGAATTGATCAGAAAACATTGGCTGCTTTGAAGATGAACAATCAACCCCTCTTGGGTGGTGGAAATGACATAAATGCCCCCGTGGGTCTTGCTGGCTATCATGGAAACGGGCCTAACAACAATGCTGGTGGTCTTGTAGGGAATCCCAGTGGGATGGGGGGATTTCAAGTCCATCCAAACACAGGGTTCCAAACAGGCCCTAATGGCTTTTTTACTGGTGGTCATCATCTCAATCCATCAACCATGATGATGAACATGAATGGGTACAACAACATGAACCCATCATCAGCATCAATGATGATGAACATGCAGAATAGGCAAGCTATGCAACAACAACCTCAGATGATGTTTCATAGGTCTCCCATGGTTCCCCCAAGCACTGGGTACTATTACAATAATGCCCCTCCCTATCCGTACACTAATTACAGTGCTGAACCTGCTAATTACTATGGTGGTGGTGGTGATCACTCTTCTGCTTCCCATATGTTCAGTGATGACAACACT

Network for GWHGAAZE012538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0266

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.27	HMA	17	72	2.80E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.494
	SRR3591706	second leaf	13.943
	SRR3591707	mature leaf	3.921
	SRR3591708	Shoot apex	23.883
	SRR3591709	Stem	0.248
	SRR3591710	White floral bud	6.419
	SRR3591711	White flower	6.538
	SRR3591712	Green floral bud	0.925
	SRR3591713	Yellow flower	0.107
SRP173429	SRR8316895	Juvenile bud stage	5.137
	SRR8316896	Juvenile bud stage	1.677
	SRR8316897	Juvenile bud stage	1.689
	SRR8316894	Third green stage	1.305
	SRR8316900	Third green stage	0.252
	SRR8316901	Third green stage	0.461
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	7.914
	SRR8316903	Complete white stage	2.139
	SRR8316902	Silver flowering stage	0.204
	SRR8316904	Silver flowering stage	0.097
	SRR8316905	Silver flowering stage	0.186
	SRR8316906	Gold flowering stage	0.272
	SRR8316907	Gold flowering stage	0.372
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.689
	SRR6706287	Light intensity 50%	1.825
	SRR6706288	Light intensity 20%	1.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.815
	CNS0095593	Slightly white alabastrum(diploid) 2	6.789
	CNS0095594	Slightly white alabastrum(diploid) 3	4.467
	CNS0095595	Whole white alabastrum(diploid) 2	7.508
	CNS0095596	Whole white alabastrum(diploid) 3	0.401
	CNS0095597	Whole white alabastrum(diploid) 4	5.953
	CNS0095598	Silvery flower (diploied) 1	26.274
	CNS0095599	Silvery flower (diploied) 2	24.604
	CNS0095600	Silvery flower (diploied) 3	7.775
	CNS0095601	Golden flower (diploid) 1	37.588
	CNS0095602	Golden flower (diploid) 2	21.554
	CNS0095603	Golden flower (diploid) 3	20.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.463
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.672
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.574
	CNS0095610	Silvery flower (tetraploid) 1	0.218
	CNS0095611	Silvery flower (tetraploid) 2	5.473
	CNS0095612	Silvery flower (tetraploid) 3	1.926
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	0.307
	CNS0095615	Golden flower (tetraploid) 3	0.122
CRA001975	CRR073297	Stem 1	3.161
	CRR073298	Stem 2	3.357
	CRR073299	Stem 3	3.990
	CRR073300	Leaf 1	0.626
	CRR073301	Leaf 2	0.881
	CRR073302	Leaf 3	0.193
	CRR073303	Juvenile bud 1	0.069
	CRR073304	Juvenile bud 2	0.056
	CRR073305	Juvenile bud 3	0.765
	CRR073306	Third green 1	0.601
	CRR073307	Third green 2	0.305
	CRR073308	Third green 3	0.118
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.223
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	9.226
	CRR073316	Gold flowering 2	10.067
	CRR073317	Gold flowering 3	4.532
	CRR073318	Tawny withering 1	0.725
	CRR073319	Tawny withering 2	0.805
	CRR073320	Tawny withering 3	0.692