Detail information of GWHGAAZE012554


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004238867.10PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum lycopersicum]
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|K4BX20|K4BX20_SOLLC0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIR10AT5G08690.10ATP synthase alpha/beta family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8768821187692628-
GWHAAZE00000003mRNA8768821187692628-
GWHAAZE00000003exon8769215887692628-
GWHAAZE00000003exon8769097087691045-
GWHAAZE00000003exon8769078987690877-
GWHAAZE00000003exon8769050187690618-
GWHAAZE00000003exon8769031187690414-
GWHAAZE00000003exon8769005287690171-
GWHAAZE00000003exon8768969387689917-
GWHAAZE00000003exon8768927787689588-
GWHAAZE00000003exon8768821187688324-
GWHAAZE00000003CDS8769215887692628-
GWHAAZE00000003CDS8769097087691045-
GWHAAZE00000003CDS8769078987690877-
GWHAAZE00000003CDS8769050187690618-
GWHAAZE00000003CDS8769031187690414-
GWHAAZE00000003CDS8769005287690171-
GWHAAZE00000003CDS8768969387689917-
GWHAAZE00000003CDS8768927787689588-
GWHAAZE00000003CDS8768821187688324-
Transcript Sequence

Network for GWHGAAZE012554

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.9Synthase_beta1467.10E-14
PF02874.24ATP-synt_ab_N871533.00E-20
PF00006.26ATP-synt_ab2104187.50E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0006754biological_processATP biosynthetic process
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0000275cellular_componentmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf624.607
SRR3591706second leaf213.521
SRR3591707mature leaf115.566
SRR3591708Shoot apex369.053
SRR3591709Stem264.830
SRR3591710White floral bud296.415
SRR3591711White flower266.111
SRR3591712Green floral bud372.631
SRR3591713Yellow flower178.217
SRP173429 SRR8316895Juvenile bud stage 254.245
SRR8316896Juvenile bud stage 319.950
SRR8316897Juvenile bud stage 247.320
SRR8316894Third green stage 133.602
SRR8316900Third green stage 481.074
SRR8316901Third green stage 411.394
SRR8316898Complete white stage 161.079
SRR8316899Complete white stage 387.430
SRR8316903Complete white stage 216.657
SRR8316902Silver flowering stage131.920
SRR8316904Silver flowering stage170.746
SRR8316905Silver flowering stage83.781
SRR8316906Gold flowering stage 221.377
SRR8316907Gold flowering stage 265.275
SRR8316908Gold flowering stage 279.174
SRP132670SRR6706286Control331.582
SRR6706287Light intensity 50%360.090
SRR6706288Light intensity 20%398.684
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1193.339
CNS0095593Slightly white alabastrum(diploid) 2229.659
CNS0095594Slightly white alabastrum(diploid) 3176.675
CNS0095595Whole white alabastrum(diploid) 2228.288
CNS0095596Whole white alabastrum(diploid) 3223.001
CNS0095597Whole white alabastrum(diploid) 4181.157
CNS0095598Silvery flower (diploied) 1178.384
CNS0095599Silvery flower (diploied) 2208.975
CNS0095600Silvery flower (diploied) 3288.201
CNS0095601Golden flower (diploid) 1149.375
CNS0095602Golden flower (diploid) 2243.482
CNS0095603Golden flower (diploid) 3236.792
CNS0095604Slightly white alabastrum(tetraploid) 1275.378
CNS0095605Slightly white alabastrum(tetraploid) 2208.580
CNS0095606Slightly white alabastrum(tetraploid) 3454.581
CNS0095607Whole white alabastrum(tetraploid) 1166.249
CNS0095608Whole white alabastrum(tetraploid) 2171.714
CNS0095609Whole white alabastrum(tetraploid) 3419.644
CNS0095610Silvery flower (tetraploid) 1256.858
CNS0095611Silvery flower (tetraploid) 2262.889
CNS0095612Silvery flower (tetraploid) 3250.152
CNS0095613Golden flower (tetraploid) 191.174
CNS0095614Golden flower (tetraploid) 2200.685
CNS0095615Golden flower (tetraploid) 3127.536
CRA001975CRR073297Stem 1421.992
CRR073298Stem 2404.030
CRR073299Stem 3504.680
CRR073300Leaf 1506.146
CRR073301Leaf 2489.706
CRR073302Leaf 3614.144
CRR073303Juvenile bud 1652.955
CRR073304Juvenile bud 2575.215
CRR073305Juvenile bud 3654.807
CRR073306Third green 1371.011
CRR073307Third green 2328.046
CRR073308Third green 3293.554
CRR073309Second white 1458.599
CRR073310Second white 2247.014
CRR073311Second white 3228.407
CRR073312Silver flowering 1259.807
CRR073313Silver flowering 2347.496
CRR073314Silver flowering 3254.074
CRR073315Gold flowering 1128.207
CRR073316Gold flowering 2184.254
CRR073317Gold flowering 3156.915
CRR073318Tawny withering 1350.758
CRR073319Tawny withering 2268.164
CRR073320Tawny withering 3335.583