Detail information of GWHGAAZE012565


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283507.13.36267E-73PREDICTED: E3 ubiquitin-protein ligase RHA2A [Vitis vinifera]
Swissprottr|Q9ZT50|RHA2A_ARATH7E-45E3 ubiquitin-protein ligase RHA2A
trEMBLtr|A0A068TZE8|A0A068TZE8_COFCA3E-62Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00698.1}
TAIR10AT1G15100.12E-31RING-H2 finger A2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8781860887819084+
GWHAAZE00000003mRNA8781860887819084+
GWHAAZE00000003exon8781860887819084+
GWHAAZE00000003CDS8781860887819084+
Transcript Sequence

Network for GWHGAAZE012565

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2881317.80E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.003
SRR3591706second leaf13.947
SRR3591707mature leaf35.447
SRR3591708Shoot apex6.762
SRR3591709Stem13.670
SRR3591710White floral bud11.951
SRR3591711White flower12.218
SRR3591712Green floral bud4.229
SRR3591713Yellow flower14.924
SRP173429 SRR8316895Juvenile bud stage 2.685
SRR8316896Juvenile bud stage 7.935
SRR8316897Juvenile bud stage 0.743
SRR8316894Third green stage 1.207
SRR8316900Third green stage 6.992
SRR8316901Third green stage 8.144
SRR8316898Complete white stage 18.211
SRR8316899Complete white stage 15.157
SRR8316903Complete white stage 14.584
SRR8316902Silver flowering stage9.996
SRR8316904Silver flowering stage10.027
SRR8316905Silver flowering stage5.325
SRR8316906Gold flowering stage 16.126
SRR8316907Gold flowering stage 20.535
SRR8316908Gold flowering stage 13.606
SRP132670SRR6706286Control11.389
SRR6706287Light intensity 50%9.203
SRR6706288Light intensity 20%9.508
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.583
CNS0095593Slightly white alabastrum(diploid) 210.699
CNS0095594Slightly white alabastrum(diploid) 312.147
CNS0095595Whole white alabastrum(diploid) 211.076
CNS0095596Whole white alabastrum(diploid) 311.304
CNS0095597Whole white alabastrum(diploid) 49.092
CNS0095598Silvery flower (diploied) 18.923
CNS0095599Silvery flower (diploied) 214.836
CNS0095600Silvery flower (diploied) 332.823
CNS0095601Golden flower (diploid) 126.049
CNS0095602Golden flower (diploid) 223.476
CNS0095603Golden flower (diploid) 324.620
CNS0095604Slightly white alabastrum(tetraploid) 15.295
CNS0095605Slightly white alabastrum(tetraploid) 23.619
CNS0095606Slightly white alabastrum(tetraploid) 37.119
CNS0095607Whole white alabastrum(tetraploid) 16.697
CNS0095608Whole white alabastrum(tetraploid) 25.128
CNS0095609Whole white alabastrum(tetraploid) 38.877
CNS0095610Silvery flower (tetraploid) 116.583
CNS0095611Silvery flower (tetraploid) 219.175
CNS0095612Silvery flower (tetraploid) 37.416
CNS0095613Golden flower (tetraploid) 114.310
CNS0095614Golden flower (tetraploid) 217.150
CNS0095615Golden flower (tetraploid) 39.413
CRA001975CRR073297Stem 112.909
CRR073298Stem 213.189
CRR073299Stem 317.902
CRR073300Leaf 111.771
CRR073301Leaf 216.857
CRR073302Leaf 315.718
CRR073303Juvenile bud 126.995
CRR073304Juvenile bud 244.948
CRR073305Juvenile bud 320.248
CRR073306Third green 170.225
CRR073307Third green 268.815
CRR073308Third green 360.538
CRR073309Second white 148.840
CRR073310Second white 239.023
CRR073311Second white 325.360
CRR073312Silver flowering 118.222
CRR073313Silver flowering 225.125
CRR073314Silver flowering 317.249
CRR073315Gold flowering 133.114
CRR073316Gold flowering 230.978
CRR073317Gold flowering 326.411
CRR073318Tawny withering 112.541
CRR073319Tawny withering 214.443
CRR073320Tawny withering 310.302