Gene detail

Detail information of GWHGAAZE012572

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282940.1	PREDICTED: elongator complex protein 2 isoform X2 [Vitis vinifera]
Swissprot	tr\|F4I1S7\|ELP2_ARATH	Elongator complex protein 2
trEMBL	tr\|F6HEV0\|F6HEV0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50876.1}
TAIR10	AT1G49540.1	elongator protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	87977092	87982450	-
GWHAAZE00000003	mRNA	87977092	87982450	-
GWHAAZE00000003	exon	87982156	87982450	-
GWHAAZE00000003	exon	87981989	87982076	-
GWHAAZE00000003	exon	87981636	87981721	-
GWHAAZE00000003	exon	87980663	87980816	-
GWHAAZE00000003	exon	87980380	87980540	-
GWHAAZE00000003	exon	87979611	87980276	-
GWHAAZE00000003	exon	87979135	87979456	-
GWHAAZE00000003	exon	87978713	87978930	-
GWHAAZE00000003	exon	87978334	87978511	-
GWHAAZE00000003	exon	87977092	87977582	-
GWHAAZE00000003	five_prime_UTR	87982324	87982450	-
GWHAAZE00000003	CDS	87982156	87982323	-
GWHAAZE00000003	CDS	87981989	87982076	-
GWHAAZE00000003	CDS	87981636	87981721	-
GWHAAZE00000003	CDS	87980663	87980816	-
GWHAAZE00000003	CDS	87980380	87980540	-
GWHAAZE00000003	CDS	87979611	87980276	-
GWHAAZE00000003	CDS	87979135	87979456	-
GWHAAZE00000003	CDS	87978713	87978930	-
GWHAAZE00000003	CDS	87978334	87978511	-
GWHAAZE00000003	CDS	87977092	87977582	-

Transcript Sequence
>GWHTAAZE012586 CTCAATTCAGTTCTCTCTCTTTCTGTTTTCCCTAACCATCTTCCCCTGAAACTACCCTCTGCCTCTGAATACAGTTTATATATCAAACGCCGTTACATACACCACCGCCTCTCTCTCTCTCTATCGCTATATATATATATTTGTATATACGGAAGCCATGTCTAATGGTAAAGTGGAAGTGGAAAGAGTTTTCATAGGAACTGGTTGCAACAGAATCGTCAACAACGTCTCATGGGGCGCCTCTGATTTGGTAGCCTTTGGTGCCCAAAACGCCGTCTCTATTTTCTGCCCTAAGTCTGCACAAATATTAACTACACTTCCCGGCCACAAGGCTTCGGTGAACTGCACTCATTGGCTTCCTAGCAACAAGTACGCATTTAAAGCTAAAAACTTGGGGCGTCACTTTCTACTGTCGGGAGATGCCGTTGGTGCCATTATCCTCTGGGAGTTATCTCTTAGGAACAGGAAGTGGAGGTATGTGTCTCAAGTACCGCAACCACACAAGAAAGGTGTCACATGCATTACTGGCGCTACGATTTCTCAAACTGATGCGATCTTTGCATCTACCTCATCTGATGGTACGGTTTCTGTGTGGGAAGTAATCTTTCCGTCAGTATACGGAGGTGACTGTAAATTTTCATGTTTGGAATCCCTCTCTGTTGGTTCAAAACCTATGGTTGCACTTGCACTAGCAGAGTTGCTGGGAAACACCGGTCACTTAATCCTTGCAATGGGGGGATTGGATAACAAGATTCATCTGTACTGTGGTGAGAGGACAGGAAATTTTGTTCATGCTTGTGAGTTAAAAGGGCATACTGATTGGATCCGTAGTTTGGATTTCTCGTTACCTATATGTACAAATGGTAAAACTGATAGTCTCTTACTAGTAAGTTCTTCTCAAGACAAAGGCATACGGATATGGAGAATGGCTTTACGTGATCCTCTATCTAATTCTAGTGACAAGAAAGAAGAAATGAGCTTGGCCTCTTACATCAAAGGTCCTGTAGTTGTTGCTGGTTCTTCCTCGTATCAAATATCTTTAGAATCTCTTCTAGTTGGACACGAAGACTGGGTGTATTCAGTGGAGTGGCAACCCCCTTCATCCATGGAGGGCAATGCGTGTTACCAACCCGAAAGCATTTTATCTGCTTCCATGGACAAGACTATGATGATCTGGCAACCTGAGAGGACTACGGGTATTTGGATGAATGTGGTTACTGTTGGAGAGTTAAGCCATTGTGCTTTAGGGTTTTATGGTGGGCATTGGAGCCCAAATGGAGATTCGATCTTAGCACACGGATATGGTGGATCTTTCCATCTTTGGAAGAATGTTGGTGTTGACTTTGATAATTGGCAACCACAAAAAGTTCCCTCTGGGCACTTCGCATCCGTATCAGATATTTCATGGGCTAGGGCTGGTGAATATATGTTGTCCGTCAGTCATGATCAGACAACTAGAATCTTTGCTCCTTGGATTAATGAAAGTTCTTCAGTAAATGAGGACACTTACCATGAAATAGCTCGGCCTCAAGTTCATGGCCATGATATAAATTGCGTAACAATTATCCAAGGGAAGGGGAACCACCGATATGTGAGTGGGGCTGAGGAGAAAGTCGCCAGAGTTTTTGAAGCTCCTTTGTCTTTCTTGAAGACCTTGAATAATGTTACCTCACTGAATTCTAATTATCCCGAAGACCTGCAAGTCGATACACAGGTTTTGGGTGCAAATATGTCTGCTCTTGGGCTCTCACAGAAACCTATTTATGTTCAAACTTCATATGAGACGCCAGACAGAAATGGAAACGAAGGTATCGACACTTTTGAAACTGTTCCAGATGCAATTCCAGTTGTGTTTACTGAACCACCTATTGAAGAACAACTGGCTTTCCATACGCTATGGCCCGAGTCTCACAAACTTTATGGTCATGGAAATGAGCTGTTTTCTTTATGTTCTGACCATCAAGGGAAGCATGTTGCTTCATCATGCAAGGCTCAATCGGCTAAGGTGGCAGAAATATGGCTATGGCAAGTGGGTACTTGGAAGGCAGTTGGACGTATGCAGTCTCATAGCTTAACAGTGACGCAGATGGAATTCTCTCATGATGACAATTTTCTTTTGACTGTCTCAAGGGATCGCCATTTCTCCATTTTCTCCATTAACCAAACAGGCATGGACGAAGTAAGTTACCAGCTCCTAACTAGGCAAGAGGCCCACAAAAGGATAGTATGGGCCTGCAGTTGGAACCCATTTGGTCATGAATTTGCCACGGGTTCAAGGGACAAAATCGTCAAAATCTGGAGCATAGAAAAAGAATCCTCAGTAAAGCTCCTAATGACTTTACCGCAGTTCAATAGTAGTGTCACTGCGCTATCTTGGGTTGGTCTGAATCGTGAGAGCAATGATGGGCTTCTTGCTGTTGGAATGGAAAATGGCCTCATTGAATTGTGGAGTCTCGCCATTAGTAGAAATGGAGAGTGTACTGTTGTGGTACCAACTGCTGCTCTCATTTTACGGTTTGACCCGTTCATGTGCCATGTTTCGGCGGTGCATCGTTTAGCGTGGAGAAGCTCTGAGTTGAGCGAAGGCTCAAAGAGCGTGCAGCTTGCTTCTTGTGGAGCTGATCATTGTGTGAGAGTTTTTGAGGTAAATGTTGTTTAA

Network for GWHGAAZE012572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	124	156	0.049
PF00400.33	WD40	225	265	0.017
PF00400.33	WD40	309	350	0.048
PF00400.33	WD40	409	446	0.018
PF00400.33	WD40	694	725	0.00013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.648
	SRR3591706	second leaf	6.797
	SRR3591707	mature leaf	5.948
	SRR3591708	Shoot apex	12.244
	SRR3591709	Stem	5.636
	SRR3591710	White floral bud	5.788
	SRR3591711	White flower	8.778
	SRR3591712	Green floral bud	8.087
	SRR3591713	Yellow flower	5.858
SRP173429	SRR8316895	Juvenile bud stage	9.054
	SRR8316896	Juvenile bud stage	9.785
	SRR8316897	Juvenile bud stage	5.369
	SRR8316894	Third green stage	5.640
	SRR8316900	Third green stage	14.002
	SRR8316901	Third green stage	11.687
	SRR8316898	Complete white stage	4.101
	SRR8316899	Complete white stage	15.735
	SRR8316903	Complete white stage	7.659
	SRR8316902	Silver flowering stage	5.984
	SRR8316904	Silver flowering stage	9.384
	SRR8316905	Silver flowering stage	3.769
	SRR8316906	Gold flowering stage	15.290
	SRR8316907	Gold flowering stage	13.830
	SRR8316908	Gold flowering stage	16.341
SRP132670	SRR6706286	Control	8.886
	SRR6706287	Light intensity 50%	10.597
	SRR6706288	Light intensity 20%	10.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.079
	CNS0095593	Slightly white alabastrum(diploid) 2	7.345
	CNS0095594	Slightly white alabastrum(diploid) 3	6.685
	CNS0095595	Whole white alabastrum(diploid) 2	7.684
	CNS0095596	Whole white alabastrum(diploid) 3	7.036
	CNS0095597	Whole white alabastrum(diploid) 4	5.970
	CNS0095598	Silvery flower (diploied) 1	8.936
	CNS0095599	Silvery flower (diploied) 2	8.494
	CNS0095600	Silvery flower (diploied) 3	12.895
	CNS0095601	Golden flower (diploid) 1	6.201
	CNS0095602	Golden flower (diploid) 2	14.251
	CNS0095603	Golden flower (diploid) 3	13.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.957
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.579
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.095
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.316
	CNS0095610	Silvery flower (tetraploid) 1	9.508
	CNS0095611	Silvery flower (tetraploid) 2	12.019
	CNS0095612	Silvery flower (tetraploid) 3	9.298
	CNS0095613	Golden flower (tetraploid) 1	5.600
	CNS0095614	Golden flower (tetraploid) 2	8.716
	CNS0095615	Golden flower (tetraploid) 3	9.241
CRA001975	CRR073297	Stem 1	12.026
	CRR073298	Stem 2	10.128
	CRR073299	Stem 3	10.672
	CRR073300	Leaf 1	11.764
	CRR073301	Leaf 2	10.606
	CRR073302	Leaf 3	11.345
	CRR073303	Juvenile bud 1	9.196
	CRR073304	Juvenile bud 2	4.766
	CRR073305	Juvenile bud 3	9.722
	CRR073306	Third green 1	1.611
	CRR073307	Third green 2	1.878
	CRR073308	Third green 3	2.572
	CRR073309	Second white 1	6.888
	CRR073310	Second white 2	5.767
	CRR073311	Second white 3	9.476
	CRR073312	Silver flowering 1	7.503
	CRR073313	Silver flowering 2	6.784
	CRR073314	Silver flowering 3	6.088
	CRR073315	Gold flowering 1	6.240
	CRR073316	Gold flowering 2	11.979
	CRR073317	Gold flowering 3	7.193
	CRR073318	Tawny withering 1	6.013
	CRR073319	Tawny withering 2	9.019
	CRR073320	Tawny withering 3	7.727