Gene detail

Detail information of GWHGAAZE012580

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650248.1	7.7816E-85	PREDICTED: uncharacterized protein LOC100259351 [Vitis vinifera]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	2E-38	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|A5C0P3\|A5C0P3_VITVI	8E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81685.1}
TAIR10	AT1G25390.1	5E-55	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88056504	88067734	+
GWHAAZE00000003	mRNA	88056504	88067734	+
GWHAAZE00000003	exon	88056504	88057073	+
GWHAAZE00000003	exon	88064476	88064757	+
GWHAAZE00000003	exon	88065185	88065923	+
GWHAAZE00000003	exon	88066047	88066079	+
GWHAAZE00000003	exon	88066188	88066439	+
GWHAAZE00000003	exon	88066752	88066878	+
GWHAAZE00000003	exon	88067314	88067734	+
GWHAAZE00000003	CDS	88056504	88057073	+
GWHAAZE00000003	CDS	88064476	88064757	+
GWHAAZE00000003	CDS	88065185	88065923	+
GWHAAZE00000003	CDS	88066047	88066079	+
GWHAAZE00000003	CDS	88066188	88066439	+
GWHAAZE00000003	CDS	88066752	88066878	+
GWHAAZE00000003	CDS	88067314	88067734	+

Transcript Sequence
>GWHTAAZE012594 ATGAACAAACAGTACTTATATTTTTTGGCGATTACTTTATTCATTTTATTGCAAAAATCTTACTGCGTGGATCCATTTTATGAAGCTTGTGCCCCAACAAAGTGTGGCCGACACAACATAAGTTACCCGTTCTATATTAAAGGCCAGAATTCGTCTTGTGGGTACCCTGGATTTGAGCTCACTTGTACCAACAATGAATACCCAGTTCTTCAAATTCCTCAAAACGATTACGTAGTGGATCAATTTTACTACAACAATCGCTCCATTCGAGTGTTCAACGCCGCCGTTTTGAGTGTGGAAACTGGGTGCTTGCCGCAGATTAGGAACTTGAGTCTGGATAATAGGTTTAGTTTGGTTAATGAGTCGGGGGAGTTGGTTTTGTTCAGCAACTGTTCGAGGAATAATTTATCGAGGGAATTAATGGGGTATAGAGTTGAGTGCGGGGGATGGGAGCTAGCAATGCTTCGTGGTGATGAGGAGGTAGGGGTTGCGATGGAGGAGTGTGAGAAGAATGTGGTGGCGCCGGTGGAGGTGTATGGTGGTGAGGAGGTGAGGGAGTATAGGGAGTTGTCTTATGCTGTTTTAAACACTGGAGAAAAGAGCATTAATTGTAGTGAAATGCCTCGCGAGTCTTATGTTGCTGCGCCAGTTGAATTAGAAGGAGGGCAGCTGAATCAAACAGTGGAGAGTATTGATTATACAGAGTTATTAAGAAATGGATTTGCACTTGAATGGAGTGCTGCTATTAGTTGCACCGAGTGTGAAAGAAGCGGTGGTCATTGTGGTTTCAATCACAGTGAAATTGGGTGTTTTTTGCTTTTGATGGAGAGCACCCAAAACGCTGCAAAAATGATGGCTTCTACTACTGTCTCTTTTTTAGCTATCCTTTTTCTCTCAAATCTTGCGTTTCTTCATTCGGCTCAAGAAGAAGACACATACCCATCAGGTTGTAGCCCATTCTACTGCGGACCAAAAATACAATTGATCGGTTTTCCCTTCTTTAATACCACGGATTACAAGTGCCGCGGTCTATGTGAGGTGAATTGTTCTGATTCCGAGCAATATATCAAACTAGGGAACAAATCAAAATGGTATCATCTACTTAGCATCTCTCAAGCCAATACCATCGAAATTTGCGATCAAGAACTTAATCAGCAATTTAATTCACAAAGCTGCGATTCTTTCCAAAATTTCACTCGTCCTTACTCTCCTTCTAGTTCTATTTCCTTTAAAATCTATAACAACTATAGAACCTTCTTCAAATGCACCCAGTTTACCTCAGAAGCAGATGTGTATTTTAGAAGCTATCACAATTACACGAAATGCCCAGGGTACTCTTTGTACTACAGTTATCCGAACAATCATACTAGTCTGGCTACTGCCTCTCTTCCACCGAATTGCTCCATTATTCAGCTTCCACTGCGACTACCTGAATTCTTGAATTCAACACTCGTTGACCCCTTTCAACTAATAACCGCTAGATTCTTGATTGGGCTGCATTTGACTCATAAATGTTCCAGTTGCCGTTATAGGGAAGGCAATTGTAGTTTTGATAAGGAGAATAGATTTCTTTGTCCAAATGGGAAAGAAGATAAAAGCAACTCAAAAGTGGTTTTAGCCACAGTTATACCAGGAAGTTTCATCATTACAATTTGTGCGCTTGTATTTATTATCTGGAGACACCACAAATGGAATTATGTGACACATTTACTTTCAAGAAACACTTCCTCCGACCCATCCTCAAATGAAGATCTTGAAGGCGGCAGTGTCTACTTTGGGGTTCCTGTCTTCTCCTATAGAGAACTTGAAGAAGCCACCAAAAATTTCGACCCTTCTAAAGAACTTGGTGATGGAGGTTTTGGCACGGTATACCATGGCAAACTTCGAGATGGGCGGGAAGTAGCGGTCAAGCGTCTCTACGAAAACAACTACAAGAGAGTGGAGCAGTTCATGAATGAAGTCCAAATCCTCACCCGTATGCGCCACAGGAATCTTGTGTTACTGCATAGGGATGAGATAAACTTGGCTAACTTAGCCATAAATAAGATCCAAAAGAATGCGTTTAATGAGCTGATTGACCCCGGTCTCGGATTTGAGTCGGACAGTGACGTGGAGAGGATGACTACTTCGGTGGCAGAGTTGGCTTTCCAGTGTTTGCAGCTCGAGAAGGAAATGAGGCCAAAAATGGAGGAGGTTTTGGAGGCTTTGAAGGGCATTAAGGGTTATGGGGAGTACAAAGATGAGAAAACATGGGAAGGTGATGACTATGTTGGCGTGTTGGAAAATGTAAGGCCGCCACCTTCACCTGAATCTGAAGAGGTTGTATTGTTGAAGAACGGAAAAGCGCCGCCTTCACCGGATACCGTCACTGCTAAATGGGTTAGTAGTAGTAGTAGTGCCACCATACCTATCACCAGTGGGTGA

Network for GWHGAAZE012580

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	30	91	3.60E-17
PF14380.7	WAK_assoc	194	271	1.60E-10
PF00069.26	Pkinase	612	668	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030247	molecular_function	polysaccharide binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.005
	SRR3591706	second leaf	6.835
	SRR3591707	mature leaf	12.363
	SRR3591708	Shoot apex	3.854
	SRR3591709	Stem	6.670
	SRR3591710	White floral bud	1.857
	SRR3591711	White flower	3.979
	SRR3591712	Green floral bud	1.434
	SRR3591713	Yellow flower	2.528
SRP173429	SRR8316895	Juvenile bud stage	1.465
	SRR8316896	Juvenile bud stage	1.571
	SRR8316897	Juvenile bud stage	0.669
	SRR8316894	Third green stage	0.661
	SRR8316900	Third green stage	2.887
	SRR8316901	Third green stage	2.718
	SRR8316898	Complete white stage	0.623
	SRR8316899	Complete white stage	2.596
	SRR8316903	Complete white stage	1.446
	SRR8316902	Silver flowering stage	0.887
	SRR8316904	Silver flowering stage	1.308
	SRR8316905	Silver flowering stage	0.520
	SRR8316906	Gold flowering stage	2.349
	SRR8316907	Gold flowering stage	1.214
	SRR8316908	Gold flowering stage	4.316
SRP132670	SRR6706286	Control	2.824
	SRR6706287	Light intensity 50%	2.468
	SRR6706288	Light intensity 20%	2.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.471
	CNS0095593	Slightly white alabastrum(diploid) 2	1.214
	CNS0095594	Slightly white alabastrum(diploid) 3	2.692
	CNS0095595	Whole white alabastrum(diploid) 2	2.952
	CNS0095596	Whole white alabastrum(diploid) 3	2.044
	CNS0095597	Whole white alabastrum(diploid) 4	2.561
	CNS0095598	Silvery flower (diploied) 1	3.467
	CNS0095599	Silvery flower (diploied) 2	2.226
	CNS0095600	Silvery flower (diploied) 3	2.102
	CNS0095601	Golden flower (diploid) 1	4.615
	CNS0095602	Golden flower (diploid) 2	3.291
	CNS0095603	Golden flower (diploid) 3	2.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.633
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.987
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.976
	CNS0095610	Silvery flower (tetraploid) 1	1.014
	CNS0095611	Silvery flower (tetraploid) 2	0.877
	CNS0095612	Silvery flower (tetraploid) 3	0.762
	CNS0095613	Golden flower (tetraploid) 1	0.701
	CNS0095614	Golden flower (tetraploid) 2	1.690
	CNS0095615	Golden flower (tetraploid) 3	0.451
CRA001975	CRR073297	Stem 1	1.973
	CRR073298	Stem 2	1.574
	CRR073299	Stem 3	1.657
	CRR073300	Leaf 1	1.669
	CRR073301	Leaf 2	2.088
	CRR073302	Leaf 3	1.057
	CRR073303	Juvenile bud 1	1.120
	CRR073304	Juvenile bud 2	0.711
	CRR073305	Juvenile bud 3	1.393
	CRR073306	Third green 1	0.134
	CRR073307	Third green 2	0.033
	CRR073308	Third green 3	0.197
	CRR073309	Second white 1	0.261
	CRR073310	Second white 2	0.405
	CRR073311	Second white 3	0.336
	CRR073312	Silver flowering 1	2.183
	CRR073313	Silver flowering 2	3.652
	CRR073314	Silver flowering 3	2.113
	CRR073315	Gold flowering 1	3.665
	CRR073316	Gold flowering 2	8.215
	CRR073317	Gold flowering 3	6.659
	CRR073318	Tawny withering 1	4.109
	CRR073319	Tawny withering 2	5.738
	CRR073320	Tawny withering 3	3.639