Gene detail

Detail information of GWHGAAZE012596

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009598425.1	0	PREDICTED: mRNA-decapping enzyme subunit 2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GW31\|DCP2_ARATH	8E-157	mRNA-decapping enzyme subunit 2
trEMBL	tr\|B9HLL2\|B9HLL2_POPTR	0	MutT/nudix family protein {ECO:0000313\|EMBL:EEE88458.1}
TAIR10	AT5G13570.1	3E-126	decapping 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88230040	88245062	+
GWHAAZE00000003	mRNA	88230040	88245062	+
GWHAAZE00000003	exon	88230040	88230110	+
GWHAAZE00000003	exon	88231981	88232132	+
GWHAAZE00000003	exon	88232799	88232926	+
GWHAAZE00000003	exon	88237885	88237980	+
GWHAAZE00000003	exon	88239772	88239924	+
GWHAAZE00000003	exon	88241596	88241699	+
GWHAAZE00000003	exon	88241788	88241855	+
GWHAAZE00000003	exon	88244866	88245062	+
GWHAAZE00000003	CDS	88230040	88230110	+
GWHAAZE00000003	CDS	88231981	88232132	+
GWHAAZE00000003	CDS	88232799	88232926	+
GWHAAZE00000003	CDS	88237885	88237980	+
GWHAAZE00000003	CDS	88239772	88239924	+
GWHAAZE00000003	CDS	88241596	88241699	+
GWHAAZE00000003	CDS	88241788	88241855	+
GWHAAZE00000003	CDS	88244866	88245062	+

Transcript Sequence
>GWHTAAZE012610 CTTCATCGATCTTCAAGCGCTCCACTTAAGAACGGCCTCCCTCCTCAAGAACTACTCGACGATCTATGCAGTCGCTTTGTACTGAATGTGCCAAAAGAAGATCAACAATCGTTTGAGAGGATCTTATTTCTTGTGGAGTATGCACATTGGTTCTACGAGGACAACTCAGTGGAGAAGAATCCGTCATTAAAGTCATTCACTCTGAAGGAATTTACTTCCTTAATGTTTAACAGTTGTGATGTTTTAAGACCTTATGTTGCCCATATAGACGACATTTTCAAGGATTTCACTTCGTACAAGGTCCGGGTCCCTGTAACTGGGGCCATCATTTTGGATGAAACTTATGAGCGGTGCTTACTAGTGAAGGGATGGAAGGGAACAAGCTGGAGTTTTCCACGTGGGAAAAAGAACAAAGATGAGGAAGACCACACTTGTGCTGTCAGAGAAGTCCTGGAGGAAACAGGTTTTGATGTTTCAAAACTTCTTAGCAAGGATGAGTACATTGAGATGATATTTGGACAGCAGCGGGTGCGGCTTTACATAGTTGCTGGTGTAAAAGATGATACGTCATTTGCCCCTCTCACCAAAAAGGAGATAAGTGAAATTGCTTGGCACCGGCTTGATGAACTCCAAACAGCAAGCAATGATGTAATATCCCGTGGGATCACTGGTATCAAGCTTTACATGGTTTCTCCATTCTTGGCATCTTTGAAAGCATGGATTTCAACACATCAAGCCCCTGTAGCACCAAAATCAGATGCACTTTTGAAGGGAATCAGTGTGTGGAAGGCCAAAAACAGTTCTATAGGAAGCAGCTCAACGATAGCTGCTGAGAGTCAGATAAACAGACCTGGTGGTGATGCTCATTCCCCTGACAATACAAACCCAGGCCCAGGCAAGAGCTTCAGAAGTTTCCGGTTTGATACTGCTTCGTTATTACAAAAGATGGAGACTGCTTTCTCTACTTGA

Network for GWHGAAZE012596

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05026.14	DCP2	17	99	1.30E-28
PF00293.29	NUDIX	103	213	4.70E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12613	DCP2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0016787	molecular_function	hydrolase activity
GO:0030145	molecular_function	manganese ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.066
	SRR3591706	second leaf	24.295
	SRR3591707	mature leaf	29.518
	SRR3591708	Shoot apex	44.098
	SRR3591709	Stem	50.354
	SRR3591710	White floral bud	43.480
	SRR3591711	White flower	42.379
	SRR3591712	Green floral bud	33.656
	SRR3591713	Yellow flower	45.295
SRP173429	SRR8316895	Juvenile bud stage	17.237
	SRR8316896	Juvenile bud stage	34.653
	SRR8316897	Juvenile bud stage	12.791
	SRR8316894	Third green stage	12.957
	SRR8316900	Third green stage	28.424
	SRR8316901	Third green stage	29.287
	SRR8316898	Complete white stage	18.167
	SRR8316899	Complete white stage	41.585
	SRR8316903	Complete white stage	29.372
	SRR8316902	Silver flowering stage	20.699
	SRR8316904	Silver flowering stage	30.101
	SRR8316905	Silver flowering stage	15.700
	SRR8316906	Gold flowering stage	63.640
	SRR8316907	Gold flowering stage	53.087
	SRR8316908	Gold flowering stage	52.810
SRP132670	SRR6706286	Control	27.883
	SRR6706287	Light intensity 50%	33.498
	SRR6706288	Light intensity 20%	33.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.098
	CNS0095593	Slightly white alabastrum(diploid) 2	23.239
	CNS0095594	Slightly white alabastrum(diploid) 3	26.565
	CNS0095595	Whole white alabastrum(diploid) 2	26.072
	CNS0095596	Whole white alabastrum(diploid) 3	19.861
	CNS0095597	Whole white alabastrum(diploid) 4	25.841
	CNS0095598	Silvery flower (diploied) 1	32.125
	CNS0095599	Silvery flower (diploied) 2	25.664
	CNS0095600	Silvery flower (diploied) 3	36.387
	CNS0095601	Golden flower (diploid) 1	42.615
	CNS0095602	Golden flower (diploid) 2	40.705
	CNS0095603	Golden flower (diploid) 3	38.634
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.322
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.967
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.767
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.230
	CNS0095610	Silvery flower (tetraploid) 1	41.650
	CNS0095611	Silvery flower (tetraploid) 2	44.968
	CNS0095612	Silvery flower (tetraploid) 3	41.305
	CNS0095613	Golden flower (tetraploid) 1	35.627
	CNS0095614	Golden flower (tetraploid) 2	42.899
	CNS0095615	Golden flower (tetraploid) 3	50.036
CRA001975	CRR073297	Stem 1	36.490
	CRR073298	Stem 2	33.676
	CRR073299	Stem 3	25.122
	CRR073300	Leaf 1	37.168
	CRR073301	Leaf 2	33.941
	CRR073302	Leaf 3	24.050
	CRR073303	Juvenile bud 1	24.524
	CRR073304	Juvenile bud 2	15.867
	CRR073305	Juvenile bud 3	26.616
	CRR073306	Third green 1	11.300
	CRR073307	Third green 2	11.847
	CRR073308	Third green 3	10.834
	CRR073309	Second white 1	14.206
	CRR073310	Second white 2	18.312
	CRR073311	Second white 3	18.809
	CRR073312	Silver flowering 1	15.937
	CRR073313	Silver flowering 2	10.712
	CRR073314	Silver flowering 3	16.966
	CRR073315	Gold flowering 1	20.057
	CRR073316	Gold flowering 2	27.419
	CRR073317	Gold flowering 3	22.369
	CRR073318	Tawny withering 1	28.252
	CRR073319	Tawny withering 2	23.977
	CRR073320	Tawny withering 3	25.317